1L0Q | pdb_00001l0q

Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1l0qd1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
D	d1l0qd2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
C	d1l0qc1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
C	d1l0qc2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
B	d1l0qb1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
B	d1l0qb2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
A	d1l0qa1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
A	d1l0qa2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PKD domain	8055205	3002045	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PKD domain	8055205	3002045	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PKD domain	8055205	3002045	SCOP2B (2022-06-29)
A	SCOP2 Family	YVTN repeat	8030486	4002745	SCOP2 (2022-06-29)
A	SCOP2 Family	PKD domain	8055204	4007526	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PKD domain	8055205	3002045	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PKD	e1l0qD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD	ECOD (1.6)
D	Lactonase_1	e1l0qD2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Lactonase_1	ECOD (1.6)
C	PKD	e1l0qC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD	ECOD (1.6)
C	Lactonase_1	e1l0qC2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Lactonase_1	ECOD (1.6)
B	PKD	e1l0qB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD	ECOD (1.6)
B	Lactonase_1	e1l0qB2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Lactonase_1	ECOD (1.6)
A	PKD	e1l0qA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD	ECOD (1.6)
A	Lactonase_1	e1l0qA2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Lactonase_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21783	YNCE-like beta-propeller (YNCE)	YNCE-like beta-propeller	-	Repeat
A, B, C, D	PF18911	PKD domain (PKD_4)	PKD domain	This entry is composed of PKD domains found in bacterial surface proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Surface layer protein	-	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011045	Nitrous oxide reductase, N-terminal	Homologous Superfamily
A, B, C, D	IPR035986	PKD domain superfamily	Homologous Superfamily
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR022409	PKD/Chitinase domain	Domain
A, B, C, D	IPR000601	PKD domain	Domain
A, B, C, D	IPR011964	YVTN beta-propeller repeat	Repeat
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR048433	YNCE-like beta-propeller	Domain
A, B, C, D	IPR051200	Multi-functional host-pathogen interaction and enzymatic activity protein	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Beta propellers	Lactonase, 7-bladed beta-propeller

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.