2QUX | pdb_00002qux

PP7 coat protein dimer in complex with RNA hairpin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
K [auth G]	d2quxg1	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
K [auth G]	d2quxg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
R [auth Q]	d2quxq_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
Q [auth P]	d2quxp_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
P [auth N]	d2quxn_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
O [auth M]	d2quxm_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
N [auth K]	d2quxk1	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
N [auth K]	d2quxk2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
M [auth J]	d2quxj1	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
M [auth J]	d2quxj2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
L [auth H]	d2quxh_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
J [auth E]	d2quxe_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
I [auth D]	d2quxd_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
H [auth B]	d2quxb_	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
G [auth A]	d2quxa1	Alpha and beta proteins (a+b)	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	RNA bacteriophage capsid protein	automated matches	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)
G [auth A]	d2quxa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas phage PP7 ) [TaxId: 12023 ], (Pseudomonas phage PP7 ) [TaxId: 12023 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K [auth G]	Phage_coat	e2quxG1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
R [auth Q]	Phage_coat	e2quxQ1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
Q [auth P]	Phage_coat	e2quxP1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
P [auth N]	Phage_coat	e2quxN1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
O [auth M]	Phage_coat	e2quxM1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
N [auth K]	Phage_coat	e2quxK1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
M [auth J]	Phage_coat	e2quxJ1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
L [auth H]	Phage_coat	e2quxH1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
J [auth E]	Phage_coat	e2quxE1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
I [auth D]	Phage_coat	e2quxD1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
H [auth B]	Phage_coat	e2quxB1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)
G [auth A]	Phage_coat	e2quxA1	A: a+b two layers	X: RNA bacteriophage capsid protein (From Topology)	H: RNA bacteriophage capsid protein (From Topology)	T: RNA bacteriophage capsid protein	F: Phage_coat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K [auth G]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
R [auth Q]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
Q [auth P]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
P [auth N]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
O [auth M]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
N [auth K]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
M [auth J]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
L [auth H]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
J [auth E]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
I [auth D]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
H [auth B]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)
G [auth A]	3.30.380.10	Alpha Beta	2-Layer Sandwich	MS2 Viral Coat Protein	MS2 Viral Coat Protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], L [auth H], M [auth J], N [auth K], O [auth M], P [auth N], Q [auth P], R [auth Q]	PF09063	Phage PP7 coat protein (Phage_coat)	Phage PP7 coat protein	Members of this family form the capsid of P. aeruginosa phage PP7. They adopt a secondary structure consisting of a six stranded beta sheet and an alpha helix [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], L [auth H], M [auth J], N [auth K], O [auth M], P [auth N], Q [auth P], R [auth Q]	Coat protein	RNA binding binding nucleic acid binding identical protein binding protein binding	regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process regulation of metabolic process	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component
A [auth C], B [auth F], C [auth I], D [auth L], E [auth O], A [auth C], B [auth F], C [auth I], D [auth L], E [auth O], F [auth R]	RNA (25-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], L [auth H], M [auth J], N [auth K], O [auth M], P [auth N], Q [auth P], R [auth Q]	IPR015954	Bacteriophage RNA-type, capsid	Homologous Superfamily
G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], G [auth A], H [auth B], I [auth D], J [auth E], K [auth G], L [auth H], M [auth J], N [auth K], O [auth M], P [auth N], Q [auth P], R [auth Q]	IPR015148	Bacteriophage PP7 capsid	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.