2O3I | pdb_00002o3i

X-ray Crystal Structure of Protein CV_3147 from Chromobacterium violaceum. Northeast Structural Genomics Consortium Target CvR68.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2o3ib_	Multi-domain proteins (alpha and beta)	CV3147-like	CV3147-like	CV3147-like	Hypothetical protein CV3147	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)
A	d2o3ia1	Multi-domain proteins (alpha and beta)	CV3147-like	CV3147-like	CV3147-like	Hypothetical protein CV3147	(Chromobacterium violaceum ) [TaxId: 536 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	CV3147 C-terminal domain-like	8054392	3002289	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CV3147 N-terminal domain-like	8034989	3001700	SCOP2B (2022-06-29)
A	SCOP2 Family	CV3147-like	8022609	4002750	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CV3147 N-terminal domain-like	8034989	3001700	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CV3147 C-terminal domain-like	8054392	3002289	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF917_C	e2o3iB1	A: beta barrels	X: barrel domain in CV3147-like proteins (From Topology)	H: barrel domain in CV3147-like proteins (From Topology)	T: barrel domain in CV3147-like proteins	F: DUF917_C	ECOD (1.6)
B	DUF917_N	e2o3iB2	A: a/b three-layered sandwiches	X: a/b domain in CV3147-like proteins (From Topology)	H: a/b domain in CV3147-like proteins (From Topology)	T: a/b domain in CV3147-like proteins	F: DUF917_N	ECOD (1.6)
A	DUF917_C	e2o3iA1	A: beta barrels	X: barrel domain in CV3147-like proteins (From Topology)	H: barrel domain in CV3147-like proteins (From Topology)	T: barrel domain in CV3147-like proteins	F: DUF917_C	ECOD (1.6)
A	DUF917_N	e2o3iA2	A: a/b three-layered sandwiches	X: a/b domain in CV3147-like proteins (From Topology)	H: a/b domain in CV3147-like proteins (From Topology)	T: a/b domain in CV3147-like proteins	F: DUF917_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1610.10	Alpha Beta	3-Layer(aba) Sandwich	CV3147-like fold	CV3147-like domain	CATH (4.3.0)
B	2.40.390.10	Mainly Beta	Beta Barrel	CV3147-like	CV3147-like	CATH (4.3.0)
A	3.40.1610.10	Alpha Beta	3-Layer(aba) Sandwich	CV3147-like fold	CV3147-like domain	CATH (4.3.0)
A	2.40.390.10	Mainly Beta	Beta Barrel	CV3147-like	CV3147-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF06032	S-Me-THD-like, N-terminal domain (S-Me-THD_N)	S-Me-THD-like, N-terminal domain	This 3-layer(aba) sandwich domain is found at the N terminus of S-methyl thiohydantoin desulfurase from Variovorax sp. (S-Me-THD) and similar sequences mainly found in bacteria and fungi. S-Me-THD catalyses the hydrolysis of S-methyl -thiohydantoin-5 ...	This 3-layer(aba) sandwich domain is found at the N terminus of S-methyl thiohydantoin desulfurase from Variovorax sp. (S-Me-THD) and similar sequences mainly found in bacteria and fungi. S-Me-THD catalyses the hydrolysis of S-methyl -thiohydantoin-5-propanoate into hydantoin-5-propanoate and methanethiol, the third step in S-methyl ergothioneine degradation [1].	Domain
A, B	PF20906	S-Me-THD-like, C-terminal domain (S-Me-THD_C)	S-Me-THD-like, C-terminal domain	This beta barrel domain is found at the C-terminal of S-methyl thiohydantoin desulfurase from Variovorax sp. (S-Me-THD) and similar sequences mainly found in bacteria and fungi. S-Me-THD catalyses the hydrolysis of S-methyl -thiohydantoin-5-propanoat ...	This beta barrel domain is found at the C-terminal of S-methyl thiohydantoin desulfurase from Variovorax sp. (S-Me-THD) and similar sequences mainly found in bacteria and fungi. S-Me-THD catalyses the hydrolysis of S-methyl -thiohydantoin-5-propanoate into hydantoin-5-propanoate and methanethiol, the third step in S-methyl ergothioneine degradation [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR048350	S-Me-THD-like, C-terminal domain	Domain
A, B	IPR010318	S-Me-THD, N-terminal domain	Domain
A, B	IPR024071	S-Me-THD, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR027479	S-Me-THD, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.