6TKZ
Crystal structure of the DHR2 domain of DOCK10 in complex with CDC42
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d6tkzc_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | CDC42 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth D] | d6tkzd_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | CDC42 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057416 | 3002022 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057416 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | DHR-2_1st | e6tkzB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in dedicator of cytokinesis protein 9 (From Topology) | T: Helical domain in dedicator of cytokinesis protein 9 | F: DHR-2_1st | ECOD (1.6) |
A [auth B] | DHR-2_3rd | e6tkzB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in dedicator of cytokinesis protein 9 (From Topology) | T: Helical domain in dedicator of cytokinesis protein 9 | F: DHR-2_3rd | ECOD (1.6) |
A [auth B] | DHR-2_2nd | e6tkzB3 | A: a+b two layers | X: Barrel domain in dedicator of cytokinesis protein 9 (From Topology) | H: Barrel domain in dedicator of cytokinesis protein 9 (From Topology) | T: Barrel domain in dedicator of cytokinesis protein 9 | F: DHR-2_2nd | ECOD (1.6) |
D [auth A] | DHR-2_1st | e6tkzA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in dedicator of cytokinesis protein 9 (From Topology) | T: Helical domain in dedicator of cytokinesis protein 9 | F: DHR-2_1st | ECOD (1.6) |
D [auth A] | DHR-2_3rd | e6tkzA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Helical domain in dedicator of cytokinesis protein 9 (From Topology) | T: Helical domain in dedicator of cytokinesis protein 9 | F: DHR-2_3rd | ECOD (1.6) |
D [auth A] | DHR-2_2nd | e6tkzA2 | A: a+b two layers | X: Barrel domain in dedicator of cytokinesis protein 9 (From Topology) | H: Barrel domain in dedicator of cytokinesis protein 9 (From Topology) | T: Barrel domain in dedicator of cytokinesis protein 9 | F: DHR-2_2nd | ECOD (1.6) |
B [auth C] | Ras | e6tkzC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
C [auth D] | Ras | e6tkzD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], D [auth A] | PF20421 | DHR-2, Lobe C (DHR-2_Lobe_C) | DHR-2, Lobe C | - | Repeat |
A [auth B], D [auth A] | PF06920 | DHR-2, Lobe A (DHR-2_Lobe_A) | DHR-2, Lobe A | - | Repeat |
A [auth B], D [auth A] | PF20422 | DHR-2, Lobe B (DHR-2_Lobe_B) | DHR-2, Lobe B | DOCK (dedicator of cytokinesis) proteins are guanine nucleotide exchange factors (GEFs) that activate some small GTPases, such as Rac or Cdc42, by exchanging bound GDP for free GTP to control cell migration, morphogenesis, and phagocytosis. These pro ... | Domain |
B [auth C], C [auth D] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |