9H6Y | pdb_00009h6y

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]Initiator methionylated tRNA---
B [auth 2]18S ribosomal RNA---
C [auth 3]Linear mRNA---
D [auth A]Eukaryotic translation initiation factor 2 subunit 1
E [auth B]Eukaryotic translation initiation factor 2 subunit 3---
F [auth C]Small ribosomal subunit protein uS2
H [auth E]Small ribosomal subunit protein uS5
I [auth F]Small ribosomal subunit protein uS3
J [auth G]Small ribosomal subunit protein eS4
K [auth H]Small ribosomal subunit protein uS7
L [auth I]Small ribosomal subunit protein eS6
M [auth J]Small ribosomal subunit protein eS7
N [auth K]Small ribosomal subunit protein eS8
O [auth L]Small ribosomal subunit protein uS4
P [auth M]Small ribosomal subunit protein eS10 -
Q [auth N]Small ribosomal subunit protein uS17
R [auth O]Small ribosomal subunit protein eS12
S [auth P]Small ribosomal subunit protein uS15
T [auth Q]Small ribosomal subunit protein uS11
U [auth R]Small ribosomal subunit protein uS19
V [auth S]Small ribosomal subunit protein uS9
W [auth T]Small ribosomal subunit protein eS17
X [auth U]Small ribosomal subunit protein uS13
Y [auth V]Small ribosomal subunit protein eS19
AA [auth X]Small ribosomal subunit protein eS21
BA [auth Y]Small ribosomal subunit protein uS8
CA [auth Z]Small ribosomal subunit protein uS12
DA [auth a]40S ribosomal protein S24
EA [auth b]Small ribosomal subunit protein eS26
FA [auth c]Small ribosomal subunit protein eS27
GA [auth d]Small ribosomal subunit protein eS28
HA [auth e]Small ribosomal subunit protein uS14
IA [auth f]Ubiquitin-ribosomal protein eS31 fusion protein
JA [auth g]Small ribosomal subunit protein RACK1
KA [auth i]Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
NA [auth l]Small ribosomal subunit protein eS32
OA [auth n]Small ribosomal subunit protein eS25
PA [auth o]Eukaryotic translation initiation factor 5
G [auth D]Small ribosomal subunit protein eS1
MA [auth k]ATP binding cassette subfamily E member 1
LA [auth j]Eukaryotic translation initiation factor 4C - -
Z [auth W]Small ribosomal subunit protein uS10

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth A]IPR003029S1 domainDomain
D [auth A]IPR044126IF2a, S1-like domainDomain
D [auth A]IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
D [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth A]IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
D [auth A]IPR011488Translation initiation factor 2, alpha subunitFamily
F [auth C]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
F [auth C]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
F [auth C]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
F [auth C]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
F [auth C]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
F [auth C]IPR001865Small ribosomal subunit protein uS2Family
F [auth C]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
H [auth E]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
H [auth E]IPR000851Small ribosomal subunit protein uS5Family
H [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
H [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
H [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
I [auth F]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
I [auth F]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
I [auth F]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
I [auth F]IPR004044K Homology domain, type 2Domain
I [auth F]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
I [auth F]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
I [auth F]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
J [auth G]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
J [auth G]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
J [auth G]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
J [auth G]IPR002942RNA-binding S4 domainDomain
J [auth G]IPR013845Small ribosomal subunit protein eS4, central regionDomain
J [auth G]IPR000876Small ribosomal subunit protein eS4Family
J [auth G]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth G]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
J [auth G]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
J [auth G]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
J [auth G]IPR005824KOWDomain
K [auth H]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
K [auth H]IPR000235Small ribosomal subunit protein uS7Family
K [auth H]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
K [auth H]IPR023798Small ribosomal subunit protein uS7 domainDomain
K [auth H]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
L [auth I]IPR014401Small ribosomal subunit protein eS6-likeFamily
L [auth I]IPR001377Small ribosomal subunit protein eS6Family
L [auth I]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
M [auth J]IPR000554Small ribosomal subunit protein eS7Family
M [auth J]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
N [auth K]IPR001047Small ribosomal subunit protein eS8Family
N [auth K]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
N [auth K]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
N [auth K]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
O [auth L]IPR002942RNA-binding S4 domainDomain
O [auth L]IPR022801Small ribosomal subunit protein uS4Family
O [auth L]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
O [auth L]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
O [auth L]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
O [auth L]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
P [auth M]IPR037447Small ribosomal subunit protein eS10Family
P [auth M]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
P [auth M]IPR005326Plectin/eS10, N-terminalDomain
Q [auth N]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth N]IPR000266Small ribosomal subunit protein uS17Family
Q [auth N]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
Q [auth N]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
R [auth O]IPR000530Small ribosomal subunit protein eS12Family
R [auth O]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
R [auth O]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
R [auth O]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
S [auth P]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
S [auth P]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
S [auth P]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
S [auth P]IPR000589Small ribosomal subunit protein uS15Family
T [auth Q]IPR001971Small ribosomal subunit protein uS11Family
T [auth Q]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
T [auth Q]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
U [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
U [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
U [auth R]IPR002222Small ribosomal subunit protein uS19Family
U [auth R]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
V [auth S]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
V [auth S]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
V [auth S]IPR000754Small ribosomal subunit protein uS9Family
V [auth S]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
W [auth T]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
W [auth T]IPR001210Small ribosomal subunit protein eS17Family
W [auth T]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
X [auth U]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
X [auth U]IPR001892Small ribosomal subunit protein uS13Family
X [auth U]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
X [auth U]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
Y [auth V]IPR001266Small ribosomal subunit protein eS19Family
Y [auth V]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Y [auth V]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
Y [auth V]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth X]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
AA [auth X]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
AA [auth X]IPR001931Small ribosomal subunit protein eS21Family
BA [auth Y]IPR000630Small ribosomal subunit protein uS8Family
BA [auth Y]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
BA [auth Y]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
CA [auth Z]IPR006032Small ribosomal subunit protein uS12Family
CA [auth Z]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth Z]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
DA [auth a]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
DA [auth a]IPR001976Small ribosomal subunit protein eS24Family
DA [auth a]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
DA [auth a]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
EA [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
EA [auth b]IPR000892Small ribosomal subunit protein eS26Family
EA [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
FA [auth c]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
FA [auth c]IPR000592Small ribosomal subunit protein eS27Family
FA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
GA [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GA [auth d]IPR000289Small ribosomal subunit protein eS28Family
HA [auth e]IPR001209Small ribosomal subunit protein uS14Family
HA [auth e]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
HA [auth e]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
HA [auth e]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
IA [auth f]IPR019954Ubiquitin conserved siteConserved Site
IA [auth f]IPR000626Ubiquitin-like domainDomain
IA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
IA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
IA [auth f]IPR019956Ubiquitin domainDomain
IA [auth f]IPR050158Ubiquitin and ubiquitin-likeFamily
IA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth g]IPR019775WD40 repeat, conserved siteConserved Site
JA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth g]IPR045223Small ribosomal subunit protein RACK1-likeFamily
JA [auth g]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
JA [auth g]IPR001680WD40 repeatRepeat
JA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth i]IPR039415Ubiquitin-like protein FUBIDomain
KA [auth i]IPR019956Ubiquitin domainDomain
KA [auth i]IPR019954Ubiquitin conserved siteConserved Site
KA [auth i]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
KA [auth i]IPR000626Ubiquitin-like domainDomain
KA [auth i]IPR006846Small ribosomal subunit protein eS30Family
NA [auth l]IPR007836Large ribosomal subunit protein eS32Family
OA [auth n]IPR004977Small ribosomal subunit protein eS25Family
OA [auth n]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
PA [auth o]IPR016190Translation initiation factor IF2/IF5, zinc-bindingHomologous Superfamily
PA [auth o]IPR016024Armadillo-type foldHomologous Superfamily
PA [auth o]IPR016189Translation initiation factor IF2/IF5, N-terminalHomologous Superfamily
PA [auth o]IPR003307W2 domainDomain
PA [auth o]IPR002735Translation initiation factor IF2/IF5 domainDomain
PA [auth o]IPR045196Translation initiation factor IF2/IF5Family
G [auth D]IPR001593Small ribosomal subunit protein eS1Family
G [auth D]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
G [auth D]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
MA [auth k]IPR007209RNase L inhibitor RLI-like, possible metal-binding domainDomain
MA [auth k]IPR017871ABC transporter-like, conserved siteConserved Site
MA [auth k]IPR003439ABC transporter-like, ATP-binding domainDomain
MA [auth k]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
MA [auth k]IPR003593AAA+ ATPase domainDomain
MA [auth k]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
MA [auth k]IPR013283RLI1Family
MA [auth k]IPR034348RLI, domain 1Domain
MA [auth k]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LA [auth j]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
LA [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LA [auth j]IPR006196RNA-binding domain, S1, IF1 typeDomain
LA [auth j]IPR001253Translation initiation factor 1A (eIF-1A)Family
Z [auth W]IPR001848Small ribosomal subunit protein uS10Family
Z [auth W]IPR027486Small ribosomal subunit protein uS10 domainDomain
Z [auth W]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
Z [auth W]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
Z [auth W]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site