Solution NMR Structure of protein of unknown function yegP from E. coli. Ontario Center for Structural Proteomics target EC0640_1_123 Northeast Structural Genomics Consortium Target ET102.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 2 | 2D 1H-13C HSQC | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 3 | 3D CBCA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 4 | 3D HNCO | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 5 | 3D HNCA | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 6 | 3D HNCACB | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 7 | 3D HBHA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 8 | 3D HCCH-TOCSY | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 9 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| 10 | 3D 1H-13C NOESY | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| 2 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Sparky | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | all experiments using non-uniform sampling |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | peak picking | Sparky | Goddard | |
| 2 | chemical shift assignment | Sparky | Goddard | |
| 3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | chemical shift assignment | ABACUS | Lemak, Steren, Arrowsmith,Llinas | |
| 5 | structure solution | ABACUS | Lemak, Steren, Arrowsmith,Llinas | |
| 6 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 7 | refinement | CNS | BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ | |
| 8 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |














