Post-translational S-nitrosylation is an endogenous factor fine-tuning human S100A1 protein properties
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
2 | 3D HNCO | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
3 | 3D HNCA | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
4 | 3D HN(CO)CA | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
5 | 3D HNCACB | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
6 | 3D CBCA(CO)NH | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
7 | 3D HBHA(CO)NH | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
9 | 2D 1H-13C HSQC aliphatic | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
10 | 3D HCCH-TOCSY | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
11 | 3D 1H-13C NOESY aliphatic | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 | |
12 | 3D 1H-13C NOESY aromatic | 0.8 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 150 | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | Uniform NMR System | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | peak picking | Sparky | Goddard | |
4 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
5 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | refinement | YASARA | Krieger, E., Koraimann, G., and Vriend, G. |