X-RAY DIFFRACTION
Starting Model(s)
| Initial Refinement Model(s) | |||
|---|---|---|---|
| Type | Source | Accession Code | Details |
| experimental model | PDB | 1WIK | PDB ENTRIES 1WIK, 2WCI, 2WUL, 2WZ9, 3IPZ ENSEMBLE |
| experimental model | PDB | 2WCI | PDB ENTRIES 1WIK, 2WCI, 2WUL, 2WZ9, 3IPZ ENSEMBLE |
| experimental model | PDB | 2WUL | PDB ENTRIES 1WIK, 2WCI, 2WUL, 2WZ9, 3IPZ ENSEMBLE |
| experimental model | PDB | 2WZ9 | PDB ENTRIES 1WIK, 2WCI, 2WUL, 2WZ9, 3IPZ ENSEMBLE |
| experimental model | PDB | 3IPZ | PDB ENTRIES 1WIK, 2WCI, 2WUL, 2WZ9, 3IPZ ENSEMBLE |
Crystallization
| Crystalization Experiments | ||||
|---|---|---|---|---|
| ID | Method | pH | Temperature | Details |
| 1 | 0.1 M ACETATE PH 4.5, 2 M(NH4)2 SO4. | |||
| Crystal Properties | |
|---|---|
| Matthews coefficient | Solvent content |
| 4.99 | 72.31 |
Crystal Data
| Unit Cell | |
|---|---|
| Length ( Å ) | Angle ( ˚ ) |
| a = 118.317 | α = 90 |
| b = 118.317 | β = 90 |
| c = 58.84 | γ = 120 |
| Symmetry | |
|---|---|
| Space Group | P 32 2 1 |
Diffraction
| Diffraction Experiment | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
| 1 | 1 | x-ray | 100 | CCD | ADSC CCD | 2011-01-15 | M | SINGLE WAVELENGTH | ||||||
| Radiation Source | |||||
|---|---|---|---|---|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
| 1 | SYNCHROTRON | DIAMOND BEAMLINE I02 | Diamond | I02 | |
Data Collection
| Overall | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
| 1 | 1.9 | 19.72 | 99.8 | 0.07 | 11.7 | 6.1 | 37552 | 2 | 33.8 | ||||||||||
| Highest Resolution Shell | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
| 1 | 1.9 | 2 | 100 | 0.82 | 2 | 6.2 | |||||||||||||
Refinement
| Statistics | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B | ||||
| X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | PDB ENTRIES 1WIK, 2WCI, 2WUL, 2WZ9, 3IPZ ENSEMBLE | 1.9 | 19.72 | 35624 | 1872 | 99.79 | 0.18629 | 0.18491 | 0.18 | 0.21237 | 0.21 | RANDOM | 30.092 | ||||
| Temperature Factor Modeling | ||||||
|---|---|---|---|---|---|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
| 0.91 | 0.46 | 0.91 | -1.37 | |||
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| r_dihedral_angle_2_deg | 33.446 |
| r_dihedral_angle_4_deg | 16.729 |
| r_dihedral_angle_3_deg | 13.599 |
| r_dihedral_angle_1_deg | 5.066 |
| r_scangle_it | 3.762 |
| r_scbond_it | 2.29 |
| r_mcangle_it | 1.496 |
| r_angle_refined_deg | 1.484 |
| r_angle_other_deg | 0.879 |
| r_mcbond_it | 0.863 |
| Non-Hydrogen Atoms Used in Refinement | |
|---|---|
| Non-Hydrogen Atoms | Number |
| Protein Atoms | 1664 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 197 |
| Heterogen Atoms | 75 |
Software
| Software | |
|---|---|
| Software Name | Purpose |
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |














