UDP: URIDINE-5'-DIPHOSPHATE

UDP is a Ligand Of Interest in 4X6L designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4X6L_UDP_A_500Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4X6L_UDP_A_500Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4X6L_UDP_A_500Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4X6L_UDP_A_500 50% 72% 0.198 0.9490.45 0.64 - -00100%1
4X6L_UDP_B_500 39% 70% 0.214 0.9210.52 0.64 1 -10100%1
4X6L_UDP_C_500 37% 71% 0.245 0.9460.41 0.71 - -10100%1
4X7R_UDP_A_501 85% 79% 0.108 0.9740.31 0.54 - -10100%1
4X7M_UDP_A_500 76% 67% 0.123 0.9590.55 0.71 - -00100%1
8X3Q_UDP_C_401 100% 3% 0.015 0.9983.32 2.69 13 1300100%1
8X3U_UDP_B_401 100% 3% 0.012 0.9993.31 2.68 13 1320100%1
8VH8_UDP_C_704 100% 62% 0.032 0.9950.55 0.9 - 100100%1
2B69_UDP_A_900 100% 42% 0.032 0.9921.03 1.21 2 400100%1
4GYW_UDP_C_1101 100% 37% 0.037 0.9881.03 1.45 2 400100%1