PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 5M3Z designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5M3Z_PLP_A_401 | 93% | 17% | 0.082 | 0.976 | 2.08 | 1.54 | 4 | 4 | 1 | 0 | 100% | 0.6562 |
5K30_PLP_A_401 | 95% | 22% | 0.071 | 0.975 | 2.18 | 1.12 | 5 | 2 | 1 | 0 | 100% | 0.9375 |
6S0C_PLP_A_402 | 90% | 23% | 0.087 | 0.97 | 2.08 | 1.12 | 4 | 2 | 1 | 0 | 100% | 0.9375 |
5E4Z_PLP_A_404 | 81% | 21% | 0.121 | 0.975 | 2.26 | 1.1 | 6 | 2 | 0 | 0 | 100% | 0.9375 |
6EGR_PLP_A_400 | 80% | 21% | 0.105 | 0.953 | 2.05 | 1.29 | 4 | 4 | 1 | 0 | 100% | 0.9375 |
5D5S_PLP_A_403 | 63% | 10% | 0.149 | 0.945 | 2.98 | 1.33 | 3 | 1 | 0 | 0 | 100% | 0.685 |
1EKV_PLP_A_370 | 100% | 19% | 0.019 | 0.998 | 2 | 1.45 | 5 | 4 | 1 | 0 | 94% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |