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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Actinoplanes missouriensis (3)
	Escherichia coli (3)
	Homo sapiens (2)
	Mus musculus (2)
	Runella slithyformis (2)
	Streptomyces rubiginosus (2)
	Arthrobacter sp. NRRL B3728 (1)
	Bos taurus (1)
	Bradyrhizobium japonicum (1)
	Caenorhabditis elegans (1)

More...

Taxonomy

	Bacteria (18)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (25)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (25)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (9)
	2.0 - 2.5 (9)
	2.5 - 3.0 (5)

Release Date

	1990 - 1994 (5)
	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (1)
	2015 - 2019 (7)
	2020 - 2024 (6)

Enzyme Classification Name

	Isomerases (7)
	Hydrolases (4)
	Oxidoreductases (4)
	Transferases (3)
	Lyases (1)

Symmetry Type

	Asymmetric (12)
	Dihedral (9)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	All beta proteins (3)
	Artifacts (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 25 Structures

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1D8C \| pdb_00001d8c	Download File View File

MALATE SYNTHASE G COMPLEXED WITH MAGNESIUM AND GLYOXYLATE

Howard, B.R., Endrizzi, J.A., Remington, S.J.

(2000) Biochemistry 39: 3156-3168

Released	1999-11-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	MALATE SYNTHASE G (protein)
Unique Ligands	GLV, MG, SO4, SOR

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1FQA \| pdb_00001fqa	Download File View File

STRUCTURE OF MALTOTETRAITOL BOUND TO OPEN-FORM MALTODEXTRIN BINDING PROTEIN IN P2(1)CRYSTAL FORM

Duan, X., Hall, J.A., Nikaido, H., Quiocho, F.A.

(2001) J Mol Biology 306: 1115-1126

Released	2001-03-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	MALTODEXTRIN-BINDING PROTEIN (protein)
Unique branched monosaccharides	GLC, SOR

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1FQB \| pdb_00001fqb	Download File View File

STRUCTURE OF MALTOTRIOTOL BOUND TO OPEN-FORM MALTODEXTRIN BINDING PROTEIN IN P2(1)CRYSTAL FORM

Duan, X., Hall, J.A., Nikaido, H., Quiocho, F.A.

(2001) J Mol Biology 306: 1115-1126

Released	2001-03-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	MALTODEXTRIN-BINDING PROTEIN (protein)
Unique branched monosaccharides	GLC, SOR

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1XIH \| pdb_00001xih	Download File View File

MODES OF BINDING SUBSTRATES AND THEIR ANALOGUES TO THE ENZYME D-XYLOSE ISOMERASE

Carrell, H.L., Glusker, J.P.

(1994) Acta Crystallogr D Biol Crystallogr 50: 113-123

Released	1994-06-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces rubiginosus
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MN, SOR

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2DXR \| pdb_00002dxr	Download File View File

Crystal structure of the complex formed between C-terminal half of bovine lactoferrin and sorbitol at 2.85 A resolution

Mir, R., Prem kumar, R., Sinha, M., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.

To be published

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Bos taurus
Macromolecule	Lactotransferrin (protein)
Unique Ligands	CO3, FE, SO4, SOR, ZN
Unique branched monosaccharides	MAN, NAG

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2VFT \| pdb_00002vft	Download File View File

Alditol Oxidase from Streptomyces coelicolor A3(2): Complex with Sorbitol

Forneris, F., Mattevi, A.

(2008) Biochemistry 47: 978

Released	2008-01-08
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	XYLITOL OXIDASE (protein)
Unique Ligands	CL, FAD, SOR

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2XIN \| pdb_00002xin	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	CO, SOR

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3BRF \| pdb_00003brf	Download File View File

CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221

Wilson, J.J., Kovall, R.A.

(2008) J Biological Chem 283: 14781-14791

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Caenorhabditis elegans
Macromolecule	Lin-12 and glp-1 phenotype protein 1, isoform a (protein) Protein lin-12 (protein) DNA (5'-D(DAPDAPDTPDCPDTPDTPDTPDCPDCPDCPDAPDCPDAPDGPDT)-3') (nucleic acid) DNA (5'-D(DTPDTPDAPDCPDTPDGPDTPDGPDGPDGPDAPDAPDAPDGPDA)-3') (nucleic acid)
Unique Ligands	SOR

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3XIM \| pdb_00003xim	Download File View File

ARGININE RESIDUES AS STABILIZING ELEMENTS IN PROTEINS

Mrabet, N.T., Van Denbroek, A., Van Den Brande, I., Stanssens, P., Laroche, Y., Lambeir, A.-M., Matthyssens, G., Jenkins, J., Chiadmi, M., Vantilbeurgh, H., Rey, F., Janin, J., Quax, W.J., Lasters, I., Demaeyer, M., Wodak, S.J.

(1992) Biochemistry 31: 2239-2253

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	CO, SOR

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4DVO \| pdb_00004dvo	Download File View File

Room-temperature joint X-ray/neutron structure of D-xylose isomerase in complex with 2Ni2+ and per-deuterated D-sorbitol at pH 5.9

Kovalevsky, A.Y., Hanson, L., Langan, P.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1201-1206

Released	2012-08-29
Method	NEUTRON DIFFRACTION 2 Å X-RAY DIFFRACTION
Organisms	Streptomyces rubiginosus
Macromolecule	Xylose isomerase (protein)
Unique Ligands	NI, SOR

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4XIA \| pdb_00004xia	Download File View File

STRUCTURES OF D-XYLOSE ISOMERASE FROM ARTHROBACTER STRAIN B3728 CONTAINING THE INHIBITORS XYLITOL AND D-SORBITOL AT 2.5 ANGSTROMS AND 2.3 ANGSTROMS RESOLUTION, RESPECTIVELY

Henrick, K., Collyer, C.A., Blow, D.M.

(1989) J Mol Biology 208: 129-157

Released	1990-04-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Arthrobacter sp. NRRL B3728
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, SOR

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5A06 \| pdb_00005a06	Download File View File

Crystal structure of aldose-aldose oxidoreductase from Caulobacter crescentus complexed with sorbitol

Taberman, H., Rouvinen, J., Parkkinen, T.

(2015) Biochem J 472: 297

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.841 Å
Organisms	Caulobacter vibrioides CB15
Macromolecule	ALDOSE-ALDOSE OXIDOREDUCTASE (protein)
Unique Ligands	NDP, SO4, SOR

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5JO9 \| pdb_00005jo9	Download File View File

Structural characterization of the thermostable Bradyrhizobium japonicum d-sorbitol dehydrogenase

Fredslund, F., Otten, H., Navarro Poulsen, J.-C., Lo Leggio, L.

(2016) Acta Crystallogr F Struct Biol Commun 72: 846-852

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.894 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	Ribitol 2-dehydrogenase (protein)
Unique Ligands	PO4, SOR

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5K4P \| pdb_00005k4p	Download File View File

Catalytic Domain of MCR-1 phosphoethanolamine transferase

Stojanoski, V., Palzkill, T., Prasad, B.V.V., Sankaran, B.

(2016) BMC Biol 14: 81-81

Released	2016-08-31
Method	X-RAY DIFFRACTION 1.318 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	Probable phosphatidylethanolamine transferase Mcr-1 (protein)
Unique Ligands	SOR, ZN

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5M6G \| pdb_00005m6g	Download File View File

Crystal structure Glucan 1,4-beta-glucosidase from Saccharopolyspora erythraea

Gabdulkhakov, A., Tishchenko, S., Lisov, A., Leontievsky, A.

To be published

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.829 Å
Organisms	Saccharopolyspora erythraea D
Macromolecule	Beta-glucosidase (protein)
Unique Ligands	GOL, MG, PGE, SOR

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5NHA \| pdb_00005nha	Download File View File

Crystal structure of xylose isomerase from Piromyces sp. E2 in complex with two Mn2+ ions and sorbitol

Rozeboom, H.J., Janssen, D.B.

(2017) Biochemistry 56: 5991-6005

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	MN, SO4, SOR

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5XIM \| pdb_00005xim	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, SOR

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6BJD \| pdb_00006bjd	Download File View File

Crystal Structure of Human Calpain-3 Protease Core in Complex with E-64

Ye, Q., Campbell, R.L., Davies, P.L.

(2018) J Biological Chem 293: 4056-4070

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Calpain-3 (protein)
Unique Ligands	CA, CL, E64, SOR

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6FK2 \| pdb_00006fk2	Download File View File

Galectin-3 carbohydrate recognition domain in complex with lactitol

Doran, S.M.C., Faba Rodriguez, R., Hemmings, A.M.

To be published

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.01 Å
Organisms	Homo sapiens
Macromolecule	Galectin-3 (protein)
Unique branched monosaccharides	GAL, SOR

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6PEJ \| pdb_00006pej	Download File View File

Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021 bound to sorbitol

Bailey-Elkin, B.A., Kohlmeier, M.G., Oresnik, I.J., Mark, B.L.

(2021) Acta Crystallogr D Biol Crystallogr 77: 380-390

Released	2020-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	Sorbitol dehydrogenase (L-iditol 2-dehydrogenase) (protein)
Unique Ligands	SOR

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6X39 \| pdb_00006x39	Download File View File

Crystal structure of the FN5 domain of Mouse Lar

Bouyain, S., Kawakami, J.E.

(2022) PLoS One 17: e0269037-e0269037

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Receptor-type tyrosine-protein phosphatase F (protein)
Unique Ligands	SOR

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7WY1 \| pdb_00007wy1	Download File View File

Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 Haem Domain with N-Enanthyl-L-Prolyl-L-Phenylalanine in complex with Styerene

Suzuki, K., Stanfield, J.K., Shisaka, Y., Omura, K., Kasai, C., Sugimoto, H., Shoji, O.

(2023) Angew Chem Int Ed Engl 62: e202215706-e202215706

Released	2023-01-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	D0L, MI9, SOR, SYN

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7YW2 \| pdb_00007yw2	Download File View File

Crystal structure of tRNA 2'-phosphotransferase from Mus musculus

Yang, X.Y., Liu, X.H.

(2023) Nucleic Acids Res 51: 7649-7665

Released	2023-07-26
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Mus musculus
Macromolecule	tRNA 2'-phosphotransferase 1 (protein)
Unique Ligands	EPE, GLY, GOL, HQG, PO4, SOR

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8H1L \| pdb_00008h1l	Download File View File

Crystal structure of glucose-2-epimerase in complex with D-Glucitol from Runella slithyformis Runsl_4512

Wang, H., Sun, X.M., Saburi, W., Yu, J., Yao, M.

(2023) Acta Crystallogr D Struct Biol 79: 585-595

Released	2023-07-12
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Runella slithyformis
Macromolecule	N-acylglucosamine 2-epimerase (protein)
Unique Ligands	SOR

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8H1N \| pdb_00008h1n	Download File View File

Crystal structure of glucose-2-epimerase mutant_D254A in complex with D-Glucitol from Runella slithyformis Runsl_4512

Wang, H., Sun, X.M., Saburi, W., Yu, J., Yao, M.

(2023) Acta Crystallogr D Struct Biol 79: 585-595

Released	2023-07-12
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Runella slithyformis
Macromolecule	N-acylglucosamine 2-epimerase (protein)
Unique Ligands	FMT, SOR

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1D8C | pdb_00001d8c

1FQA | pdb_00001fqa

1FQB | pdb_00001fqb

1XIH | pdb_00001xih

2DXR | pdb_00002dxr

2VFT | pdb_00002vft

2XIN | pdb_00002xin

3BRF | pdb_00003brf

3XIM | pdb_00003xim

4DVO | pdb_00004dvo

4XIA | pdb_00004xia

5A06 | pdb_00005a06

5JO9 | pdb_00005jo9

5K4P | pdb_00005k4p

5M6G | pdb_00005m6g

5NHA | pdb_00005nha

5XIM | pdb_00005xim

6BJD | pdb_00006bjd

6FK2 | pdb_00006fk2

6PEJ | pdb_00006pej

6X39 | pdb_00006x39

7WY1 | pdb_00007wy1

7YW2 | pdb_00007yw2

8H1L | pdb_00008h1l

8H1N | pdb_00008h1n