Download MendeleyA Structural Approach to Gene Function and Structure Quality for Pyrococcus horikshii Fibrillarin
Boisvert, D.C., Kim, S.H.To be published.
1G8S | pdb_00001g8s
METHANOCOCCUS JANNASCHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN
- PDB DOI: https://doi.org/10.2210/pdb1G8S/pdb
- Classification: RNA BINDING PROTEIN
- Organism(s): Methanocaldococcus jannaschii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2000-11-20 Released: 2003-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.213 (Depositor), 0.210 (DCC)
- R-Value Work: 0.201 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.202 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN | 230 | Methanocaldococcus jannaschii | Mutation(s): 0 Gene Names: 0697 EC: 2.1.1 |  | |
UniProt | |||||
Find proteins for Q58108 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore Q58108 Go to UniProtKB: Q58108 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q58108 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MET Query on MET | B [auth A] | METHIONINE C5 H11 N O2 S FFEARJCKVFRZRR-BYPYZUCNSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.213 (Depositor), 0.210 (DCC)
- R-Value Work: 0.201 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.202 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 121.152 | α = 90 |
| b = 43.212 | β = 96.98 |
| c = 55.197 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2003-10-14 Deposition Author(s): Boisvert, D.C., Kim, S.H.
Revision History (Full details and data files)
- Version 1.0: 2003-10-14
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2023-08-09
Changes: Data collection, Database references, Derived calculations, Refinement description
