1JD1 | pdb_00001jd1

Crystal Structure of YEO7_yeast

PDB DOI: https://doi.org/10.2210/pdb1JD1/pdb

Classification: TRANSLATION INHIBITOR
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2001-06-12 Released: 2001-07-04
Deposition Author(s): Deaconescu, A.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.238 (Depositor)
R-Value Work:
0.207 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1).

Deaconescu, A.M., Roll-Mecak, A., Bonanno, J.B., Gerchman, S.E., Kycia, H., Studier, F.W., Burley, S.K.

(2002) Proteins 48: 431-436

PubMed: 12112709 Search on PubMed
DOI: https://doi.org/10.1002/prot.10151
Primary Citation of Related Structures:
1JD1

Organizational Affiliation

Laboratories of Molecular Biophysics, The Rockefeller University, New York, New York, USA.

Macromolecule Content

Total Structure Weight: 83.51 kDa
Atom Count: 6,117
Modelled Residue Count: 749
Deposited Residue Count: 774
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL 13.9 KDA PROTEIN IN FCY2-PET117 INTERGENIC REGION	A, B, C, D, E A, B, C, D, E, F	129	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: YERO57C
UniProt
Find proteins for P40037 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40037 Go to UniProtKB: P40037
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P40037
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.238 (Depositor)
R-Value Work: 0.207 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.18	α = 90
b = 64.1	β = 90.63
c = 80.85	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing
CNS	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2001-07-04

Deposition Author(s):

Deaconescu, A.M.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2001-07-04
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-02-03
Changes: Database references, Structure summary
Version 1.4: 2024-02-07
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.