1JSX | pdb_00001jsx

Crystal Structure of the Escherichia coli Glucose-Inhibited Division Protein B (GidB)

PDB DOI: https://doi.org/10.2210/pdb1JSX/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2001-08-19 Released: 2002-05-08
Deposition Author(s): Romanowski, M.J., Bonanno, J.B., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.275 (Depositor), 0.280 (DCC)
R-Value Work:
0.240 (Depositor), 0.240 (DCC)
R-Value Observed:
0.240 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold.

Romanowski, M.J., Bonanno, J.B., Burley, S.K.

(2002) Proteins 47: 563-567

PubMed: 12001236 Search on PubMed
DOI: https://doi.org/10.1002/prot.10121
Primary Citation of Related Structures:
1JSX

Organizational Affiliation

Laboratories of Molecular Biophysics, The Rockefeller University, New York, New York.

Macromolecule Content

Total Structure Weight: 23.46 kDa
Atom Count: 1,669
Modelled Residue Count: 193
Deposited Residue Count: 207
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucose-inhibited division protein B	A	207	Escherichia coli	Mutation(s): 0 Gene Names: gidB EC: 2.1.1.170
UniProt
Find proteins for P0A6U5 (Escherichia coli (strain K12)) Explore P0A6U5 Go to UniProtKB: P0A6U5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A6U5
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.275 (Depositor), 0.280 (DCC)
R-Value Work: 0.240 (Depositor), 0.240 (DCC)
R-Value Observed: 0.240 (Depositor)

Space Group: P 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.914	α = 90
b = 53.914	β = 90
c = 150.592	γ = 90

Software Package:

Software Name	Purpose
MLPHARE	phasing
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2002-05-08

Deposition Author(s):

Romanowski, M.J.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2002-05-08
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-02-03
Changes: Database references, Structure summary
Version 1.4: 2024-02-07
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.