Download MendeleyCrystal Structure of Yeast Hypothetical Protein YNU0_YEAST
Jiang, J.-S., Manning, N.O., Eswaramoorthy, S., Gerchman, S.E., Kumaran, D., Kycia, J.H., Lewis, H.A., Swaminathan, S., Studier, F.W.To be published.
1JZT | pdb_00001jzt
Crystal structure of yeast ynu0, YNL200c
- PDB DOI: https://doi.org/10.2210/pdb1JZT/pdb
- Classification: structural genomics, unknown function
- Organism(s): Saccharomyces cerevisiae
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2001-09-17 Released: 2001-09-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.94 Å
- R-Value Free: 0.237 (Depositor), 0.242 (DCC)
- R-Value Work: 0.200 (Depositor), 0.206 (DCC)
- R-Value Observed: 0.200 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical 27.5 kDa protein in SPX19-GCR2 intergenic region | 246 | Saccharomyces cerevisiae | Mutation(s): 4 Gene Names: YNL200C EC: 5.1.99.6 |  | |
UniProt | |||||
Find proteins for P40165 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40165 Go to UniProtKB: P40165 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P40165 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | C [auth A], D [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.94 Å
- R-Value Free: 0.237 (Depositor), 0.242 (DCC)
- R-Value Work: 0.200 (Depositor), 0.206 (DCC)
- R-Value Observed: 0.200 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.732 | α = 90 |
| b = 68.676 | β = 90 |
| c = 125.187 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ARP/wARP | model building |
| SOLVE | phasing |
| CNS | refinement |
| CCP4 | model building |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2001-09-26 Deposition Author(s): Jiang, J.-S., Manning, N.O., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2001-09-26
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2014-11-26
Changes: Other - Version 1.4: 2021-02-03
Changes: Advisory, Database references, Derived calculations, Structure summary - Version 1.5: 2024-11-06
Changes: Advisory, Data collection, Database references, Structure summary
