Download MendeleyThe Crystal Structure of a Putative Formate Dehydrogenase from Pyrobaculum Aerophilum
Peat, T.S., Newman, J., Waldo, G.S., Terwilliger, T.C.To be published.
1QP8 | pdb_00001qp8
CRYSTAL STRUCTURE OF A PUTATIVE FORMATE DEHYDROGENASE FROM PYROBACULUM AEROPHILUM
- PDB DOI: https://doi.org/10.2210/pdb1QP8/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Pyrobaculum aerophilum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 1999-06-01 Released: 1999-06-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.320 (Depositor)
- R-Value Work: 0.274 (Depositor)
- R-Value Observed: 0.274 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FORMATE DEHYDROGENASE | 303 | Pyrobaculum aerophilum | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q8ZXP5 (Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)) Explore Q8ZXP5 Go to UniProtKB: Q8ZXP5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZXP5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NDP Query on NDP | C [auth A] | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H30 N7 O17 P3 ACFIXJIJDZMPPO-NNYOXOHSSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.320 (Depositor)
- R-Value Work: 0.274 (Depositor)
- R-Value Observed: 0.274 (Depositor)
Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.76 | α = 90 |
| b = 101.76 | β = 90 |
| c = 212.95 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHARP | phasing |
| CNS | refinement |
| DENZO | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 1999-06-11 Deposition Author(s): Peat, T.S., Newman, J., Waldo, G.S., Terwilliger, T.C.
Revision History (Full details and data files)
- Version 1.0: 1999-06-11
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
