Download MendeleyCrystal structure of Phosphoribosyl-ATP pyrophosphatase from Streptomyces coelicolor. NESG target RR8.
Benach, J., Kuzin, A.P., Forouhar, F., Abashidze, M., Vorobiev, S.M., Rong, X., Acton, T.B., Montelione, G.T., Hunt, J.F.To be published.
1YXB | pdb_00001yxb
Crystal structure of Phosphoribosyl-ATP pyrophosphatase from Streptomyces coelicolor. NESG target RR8.
- PDB DOI: https://doi.org/10.2210/pdb1YXB/pdb
- Classification: HYDROLASE
- Organism(s): Streptomyces coelicolor
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-02-20 Released: 2005-03-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.295 (Depositor), 0.291 (DCC)
- R-Value Work: 0.250 (Depositor), 0.248 (DCC)
- R-Value Observed: 0.250 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoribosyl-ATP pyrophosphatase | 98 | Streptomyces coelicolor | Mutation(s): 4 Gene Names: hisE EC: 3.6.1.31 |  | |
UniProt | |||||
Find proteins for Q9EWK0 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore Q9EWK0 Go to UniProtKB: Q9EWK0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9EWK0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.295 (Depositor), 0.291 (DCC)
- R-Value Work: 0.250 (Depositor), 0.248 (DCC)
- R-Value Observed: 0.250 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.904 | α = 79.21 |
| b = 62.361 | β = 82.13 |
| c = 76.62 | γ = 75.42 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2005-03-01 Deposition Author(s): Benach, J., Kuzin, A.P., Forouhar, F., Abashidze, M., Vorobiev, S.M., Rong, X., Acton, T.B., Montelione, G.T., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2005-03-01
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
