2DP5

Structure of streptococcus pyogenes bacteriophage-associated hyaluronate lyase Hylp2

PDB DOI: https://doi.org/10.2210/pdb2DP5/pdb

Classification: LYASE
Organism(s): Streptococcus pyogenes
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-05-06 Released: 2006-05-30
Deposition Author(s): Mishra, P., Bhakuni, V., Prem Kumar, R., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.55 Å
R-Value Free:
0.236 (Depositor)
R-Value Work:
0.221 (Depositor)
R-Value Observed:
0.223 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structure of streptococcus pyogenes bacteriophage-associated hyaluronate lyase Hylp2

Mishra, P., Bhakuni, V., Prem Kumar, R., Singh, N., Sharma, S., Kaur, P., Singh, T.P.

To be published.

Macromolecule Content

Total Structure Weight: 35.83 kDa
Atom Count: 2,534
Modelled Residue Count: 332
Deposited Residue Count: 332
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hyaluronidase	A	332	Streptococcus pyogenes	Mutation(s): 0 EC: 4.2.2.1
UniProt
Find proteins for Q9A0M7 (Streptococcus pyogenes serotype M1) Explore Q9A0M7 Go to UniProtKB: Q9A0M7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9A0M7
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.55 Å
R-Value Free: 0.236 (Depositor)
R-Value Work: 0.221 (Depositor)
R-Value Observed: 0.223 (Depositor)

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.587	α = 90
b = 59.587	β = 90
c = 588.546	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-05-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-05-30
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2023-10-25
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.