Crystal structure of the complex of goat lactoperoxidase with phosphate at 2.94 A resolution
Singh, A.K., Hariprasad, G., Prem Kumar, R., Singh, N., Bhushan, A., Sharma, S., Kaur, P., Singh, T.P.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lactoperoxidase | 595 | Capra hircus | Mutation(s): 0 EC: 1.11.1.7 | ![]() | |
UniProt | |||||
Find proteins for A0A452E9Y6 (Capra hircus) Explore A0A452E9Y6 Go to UniProtKB: A0A452E9Y6 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A452E9Y6 | ||||
Glycosylation | |||||
Glycosylation Sites: 4 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C, D, G | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan: G62182OO GlyCosmos: G62182OO GlyGen: G62182OO |
Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | P [auth A], W [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
PO4 Query on PO4 | K [auth A], L [auth A], M [auth A], S [auth B], T [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
OSM Query on OSM | X [auth B] | 1-(OXIDOSULFANYL)METHANAMINE C H5 N O S KONFWJXIYYGXOO-UHFFFAOYSA-N | |||
CO3 Query on CO3 | N [auth A], U [auth B] | CARBONATE ION C O3 BVKZGUZCCUSVTD-UHFFFAOYSA-L | |||
SCN Query on SCN | R [auth A] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M | |||
CA Query on CA | O [auth A], V [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CYN Query on CYN | Q [auth A] | CYANIDE ION C N XFXPMWWXUTWYJX-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 59.199 | α = 79.93 |
b = 75.587 | β = 77.86 |
c = 83.808 | γ = 72.5 |
Software Name | Purpose |
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REFMAC | refinement |
DENZO | data reduction |
AUTOMAR | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |