Download MendeleyCrystal Structure of Pumpkin Seed Globulin
Itoh, T., Fukuda, T., Mikami, B., Utsumi, S.To be published.
2EVX | pdb_00002evx
Crystal structure of pumpkin seed globulin
- PDB DOI: https://doi.org/10.2210/pdb2EVX/pdb
- Classification: PLANT PROTEIN
- Organism(s): Cucurbita maxima
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-11-01 Released: 2006-11-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.255 (Depositor), 0.255 (DCC)
- R-Value Work: 0.205 (Depositor), 0.204 (DCC)
- R-Value Observed: 0.205 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 11S globulin beta subunit | 459 | Cucurbita maxima | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P13744 (Cucurbita maxima) Explore P13744 Go to UniProtKB: P13744 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13744 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | B [auth A], C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.255 (Depositor), 0.255 (DCC)
- R-Value Work: 0.205 (Depositor), 0.204 (DCC)
- R-Value Observed: 0.205 (Depositor)
Space Group: F 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 189.29 | α = 90 |
| b = 189.29 | β = 90 |
| c = 189.29 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2006-11-14 Deposition Author(s): Itoh, T., Fukuda, T., Mikami, B., Utsumi, S.
Revision History (Full details and data files)
- Version 1.0: 2006-11-14
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-10-23
Changes: Data collection, Database references, Derived calculations, Structure summary
