Download MendeleyCrystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila
Nocek, B., Mulligan, R., Moy, S., Joachimiak, A.To be published.
2IAF | pdb_00002iaf
Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila
- PDB DOI: https://doi.org/10.2210/pdb2IAF/pdb
- Classification: structural genomics, unknown function
- Organism(s): Legionella pneumophila
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2006-09-07 Released: 2006-10-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.224 (Depositor), 0.232 (DCC)
- R-Value Work: 0.195 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.196 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein sdhL | 151 | Legionella pneumophila | Mutation(s): 4 Gene Names: sdhL EC: 4.3.1.17 |  | |
UniProt | |||||
Find proteins for Q5WYB1 (Legionella pneumophila (strain Lens)) Explore Q5WYB1 Go to UniProtKB: Q5WYB1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5WYB1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.224 (Depositor), 0.232 (DCC)
- R-Value Work: 0.195 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.196 (Depositor)
Space Group: I 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.319 | α = 90 |
| b = 76.835 | β = 90 |
| c = 108.135 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| CCP4 | phasing |
| O | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2006-10-10 Deposition Author(s): Nocek, B., Mulligan, R., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2006-10-10
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
