Download MendeleyCrystal structure of Pseudomonas Fluorescens alanine racemase
Tsuge, H., Ohnishi, K., Yokoigawa, K.To be published.
2ODO | pdb_00002odo
Crystal structure of Pseudomonas Fluorescens alanine racemase
- PDB DOI: https://doi.org/10.2210/pdb2ODO/pdb
- Classification: ISOMERASE
- Organism(s): Pseudomonas fluorescens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-12-25 Released: 2008-02-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.247 (Depositor), 0.240 (DCC)
- R-Value Work: 0.214 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.216 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alanine racemase | 357 | Pseudomonas fluorescens | Mutation(s): 0 EC: 5.1.1.1 |  | |
UniProt | |||||
Find proteins for Q4ADX2 (Pseudomonas fluorescens) Explore Q4ADX2 Go to UniProtKB: Q4ADX2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4ADX2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | E [auth A], F [auth B], G [auth C], H [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KCX Query on KCX | A, B, C, D | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
| LLP Query on LLP | A, B, C, D | L-PEPTIDE LINKING | C14 H22 N3 O7 P |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.247 (Depositor), 0.240 (DCC)
- R-Value Work: 0.214 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.216 (Depositor)
Space Group: I 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 186.739 | α = 90 |
| b = 186.739 | β = 90 |
| c = 103.657 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrystalClear | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2008-02-05 Deposition Author(s): Tsuge, H., Ohnishi, K., Yokoigawa, K.
Revision History (Full details and data files)
- Version 1.0: 2008-02-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-11-15
Changes: Data collection
