Download MendeleyCrystal structure of the hypothetical lpl1258 protein from Legionella pneumophila
Bonanno, J.B., Freeman, J., Bain, K.T., Slocombe, A., Reyes, C., Ozyurt, S., Smyth, L., Atwell, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
2OO3 | pdb_00002oo3
Crystal structure of protein LPL1258 from Legionella pneumophila str. Philadelphia 1, Pfam DUF519
- PDB DOI: https://doi.org/10.2210/pdb2OO3/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Legionella pneumophila subsp. pneumophila
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-01-25 Released: 2007-02-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.210 (Depositor), 0.210 (DCC)
- R-Value Work: 0.164 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.166 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein involved in catabolism of external DNA | 283 | Legionella pneumophila subsp. pneumophila | Mutation(s): 0 Gene Names: lpl1258, lpg1296, DSM 7513 EC: 2.1.1.266 |  | |
UniProt | |||||
Find proteins for Q5ZVZ2 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZVZ2 Go to UniProtKB: Q5ZVZ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZVZ2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.210 (Depositor), 0.210 (DCC)
- R-Value Work: 0.164 (Depositor), 0.170 (DCC)
- R-Value Observed: 0.166 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.822 | α = 90 |
| b = 72.959 | β = 90 |
| c = 78.379 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2007-02-06 Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Slocombe, A., Reyes, C., Ozyurt, S., Smyth, L., Atwell, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-02-06
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2012-10-24
Changes: Structure summary - Version 1.4: 2018-11-14
Changes: Data collection, Structure summary - Version 1.5: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.6: 2023-12-27
Changes: Data collection, Database references
