Download MendeleyHigh Resolution Crystal Structure of the Apo Form of the Orange Protein (Apo-Orp) from Desulfovibrio Gigas
Najmudin, S., Bonifacio, C., Duarte, A.G., Moura, I., Moura, J.G., Romao, M.J.To be published.
2WFB | pdb_00002wfb
High resolution structure of the apo form of the orange protein (ORP) from Desulfovibrio gigas
- PDB DOI: https://doi.org/10.2210/pdb2WFB/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Megalodesulfovibrio gigas
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-04-03 Released: 2010-05-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.244 (Depositor)
- R-Value Work: 0.183 (Depositor)
- R-Value Observed: 0.186 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PUTATIVE UNCHARACTERIZED PROTEIN ORP | 120 | Megalodesulfovibrio gigas | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q5DUA6 (Megalodesulfovibrio gigas) Explore Q5DUA6 Go to UniProtKB: Q5DUA6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5DUA6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A], C [auth A], D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| ACT Query on ACT | E [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.244 (Depositor)
- R-Value Work: 0.183 (Depositor)
- R-Value Observed: 0.186 (Depositor)
Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.078 | α = 90 |
| b = 43.078 | β = 90 |
| c = 106.085 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| BALBES | phasing |
Entry History
Deposition Data
- Released Date: 2010-05-26 Deposition Author(s): Najmudin, S., Bonifacio, C., Duarte, A.G., Pereira, A.S., Moura, I., Moura, J.M., Romao, M.J.
Revision History (Full details and data files)
- Version 1.0: 2010-05-26
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
