2ZZQ | pdb_00002zzq

Crystal structure analysis of the HEV capsid protein, PORF2

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.81 Å
  • R-Value Free: 
    0.245 (Depositor), 0.240 (DCC) 
  • R-Value Work: 
    0.242 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 
    0.242 (Depositor) 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Role of protein domain-modularity in designating capsid assembly and antigenicity

Miyazaki, N., Xing, L., Wang, C.-Y., Li, T.-C., Takeda, N., Higashiura, A., Nakagawa, A., Tsukihara, T., Miyamura, T., Cheng, R.H.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein ORF3, Capsid protein552Hepatitis E virus (strain Myanmar)Mutation(s): 0 
Gene Names: ORF3, ORF2
UniProt
Find proteins for P29326 (Hepatitis E virus genotype 1 (isolate Human/Burma))
Explore P29326 
Go to UniProtKB:  P29326
Find proteins for P69616 (Hepatitis E virus genotype 1 (isolate Human/Burma))
Explore P69616 
Go to UniProtKB:  P69616
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP69616P29326
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.81 Å
  • R-Value Free:  0.245 (Depositor), 0.240 (DCC) 
  • R-Value Work:  0.242 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 0.242 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 337α = 90
b = 347β = 90
c = 354γ = 90
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-03-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-08-09
    Changes: Data collection, Source and taxonomy
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references, Derived calculations