Download MendeleyThe structure of a conserved protein domain (unknown function) from Corynebacterium diphtheriae.
Tan, K., Maltseva, N., Clancy, S., Joachimiak, A.To be published.
3B4Q | pdb_00003b4q
Crystal structure of a conserved protein domain (unknown function) from Corynebacterium diphtheriae
- PDB DOI: https://doi.org/10.2210/pdb3B4Q/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Corynebacterium diphtheriae NCTC 13129
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2007-10-24 Released: 2007-11-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.216 (Depositor), 0.191 (DCC)
- R-Value Work: 0.185 (Depositor), 0.185 (DCC)
- R-Value Observed: 0.186 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 94 | Corynebacterium diphtheriae NCTC 13129 | Mutation(s): 0 Gene Names: DIP0775 |  | |
UniProt | |||||
Find proteins for Q6NIK0 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)) Explore Q6NIK0 Go to UniProtKB: Q6NIK0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6NIK0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.216 (Depositor), 0.191 (DCC)
- R-Value Work: 0.185 (Depositor), 0.185 (DCC)
- R-Value Observed: 0.186 (Depositor)
Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.658 | α = 90 |
| b = 103.857 | β = 90 |
| c = 26.329 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELXS | phasing |
| MLPHARE | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2007-11-06 Deposition Author(s): Tan, K., Maltseva, N., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-11-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
