3B5M | pdb_00003b5m

Crystal structure of conserved uncharacterized protein from Rhodopirellula baltica

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free: 
    0.202 (Depositor), 0.200 (DCC) 
  • R-Value Work: 
    0.176 (Depositor), 0.170 (DCC) 
  • R-Value Observed: 
    0.177 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history. 


Literature

Crystal Structure of Conserved Uncharacterized Protein from Rhodopirellula baltica.

Patskovsky, Y., Bonanno, J.B., Sridhar, V., Rutter, M., Powell, A., Maletic, M., Rodgers, R., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein
A, B, C, D
205Rhodopirellula baltica SH 1Mutation(s): 0 
Gene Names: RB3938
UniProt
Find proteins for Q7UTD8 (Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1))
Explore Q7UTD8 
Go to UniProtKB:  Q7UTD8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7UTD8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free:  0.202 (Depositor), 0.200 (DCC) 
  • R-Value Work:  0.176 (Depositor), 0.170 (DCC) 
  • R-Value Observed: 0.177 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.268α = 93.89
b = 58.315β = 91.12
c = 73.799γ = 90.1
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
MAR345data collection
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-11-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-10-25
    Changes: Refinement description
  • Version 1.3: 2018-11-14
    Changes: Data collection, Structure summary
  • Version 1.4: 2021-02-03
    Changes: Database references, Derived calculations, Structure summary
  • Version 1.5: 2023-08-30
    Changes: Data collection, Database references, Refinement description