Download MendeleyCrystal structure of 5'-nucleotidase from Candida albicans.
Patskovsky, Y., Romero, R., Gilmore, M., Eberle, M., Bain, K., Smith, D., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3C9F | pdb_00003c9f
Crystal structure of 5'-nucleotidase from Candida albicans SC5314
- PDB DOI: https://doi.org/10.2210/pdb3C9F/pdb
- Classification: HYDROLASE
- Organism(s): Candida albicans SC5314
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2008-02-15 Released: 2008-02-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.225 (Depositor), 0.230 (DCC)
- R-Value Work: 0.186 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.188 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 5'-nucleotidase | 557 | Candida albicans SC5314 | Mutation(s): 6 Gene Names: USHA, CaO19.12802, CaO19.5342 |  | |
UniProt | |||||
Find proteins for Q5A5Q7 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore Q5A5Q7 Go to UniProtKB: Q5A5Q7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5A5Q7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | E [auth A], J [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A], G [auth B], H [auth B], I [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.225 (Depositor), 0.230 (DCC)
- R-Value Work: 0.186 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.188 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.946 | α = 90 |
| b = 106.74 | β = 90 |
| c = 150.656 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELXD | phasing |
| REFMAC | refinement |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2008-02-26 Deposition Author(s): Patskovsky, Y., Romero, R., Gilmore, M., Eberle, M., Bain, K., Smith, D., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-02-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2021-10-20
Changes: Database references - Version 1.6: 2024-02-21
Changes: Data collection, Refinement description
