Download MendeleyStructure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II
Rizkallah, P.J., Ozbey, S., Sauerborn, M.K.To be published.
3DZW | pdb_00003dzw
Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II
- PDB DOI: https://doi.org/10.2210/pdb3DZW/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Narcissus pseudonarcissus
- Mutation(s): No
- Deposited: 2008-07-30 Released: 2009-08-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.213 (Depositor), 0.220 (DCC)
- R-Value Work: 0.187 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.188 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Agglutinin | 109 | Narcissus pseudonarcissus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for C0HM45 (Narcissus pseudonarcissus) Explore C0HM45 Go to UniProtKB: C0HM45 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C0HM45 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | I [auth A], J [auth A], K [auth A], L [auth B], M [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900112 Query on PRD_900112 | C, D, E, F, G | 3alpha-alpha-mannobiose | Oligosaccharide / Metabolism |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.213 (Depositor), 0.220 (DCC)
- R-Value Work: 0.187 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.188 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.003 | α = 90 |
| b = 102.011 | β = 90 |
| c = 74.366 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| AMoRE | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2009-08-11 Deposition Author(s): Rizkallah, P.J., Ozbey, S., Sauerborn, M.K.
Revision History (Full details and data files)
- Version 1.0: 2009-08-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-08-30
Changes: Data collection, Database references, Refinement description, Structure summary - Version 2.2: 2024-11-20
Changes: Structure summary
