Download MendeleyThe Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio fischeri to 2.0A
Stein, A.J., Sather, A., Shackelford, G., Joachimiak, A.To be published.
3IGR | pdb_00003igr
The Crystal Structure of Ribosomal-protein-S5-alanine Acetyltransferase from Vibrio fischeri to 2.0A
- PDB DOI: https://doi.org/10.2210/pdb3IGR/pdb
- Classification: TRANSFERASE
- Organism(s): Aliivibrio fischeri ES114
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-07-28 Released: 2009-09-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.237 (Depositor), 0.257 (DCC)
- R-Value Work: 0.205 (Depositor), 0.232 (DCC)
- R-Value Observed: 0.207 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal-protein-S5-alanine N-acetyltransferase | 184 | Aliivibrio fischeri ES114 | Mutation(s): 0 Gene Names: rimJ, VFA0750, VF_A0750 EC: 2.3.1.128 (PDB Primary Data), 2.3.1.267 (UniProt) |  | |
UniProt | |||||
Find proteins for Q5DZH6 (Aliivibrio fischeri (strain ATCC 700601 / ES114)) Explore Q5DZH6 Go to UniProtKB: Q5DZH6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5DZH6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A], D [auth A], E [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.237 (Depositor), 0.257 (DCC)
- R-Value Work: 0.205 (Depositor), 0.232 (DCC)
- R-Value Observed: 0.207 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.504 | α = 90 |
| b = 107.173 | β = 90 |
| c = 145.719 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2009-09-01 Deposition Author(s): Stein, A.J., Sather, A., Shackelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-09-01
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
