Download MendeleyCrystal Structure of O-Succinylbenzoic Acid Synthetase from Kosmotoga Olearia
Patskovsky, Y., Toro, R., Dickey, M., Sauder, J.M., Gerlt, J., Burley, S.K., Almo, S.C.To be published.
3MWC | pdb_00003mwc
Crystal structure of probable o-succinylbenzoic acid synthetase from kosmotoga olearia
- PDB DOI: https://doi.org/10.2210/pdb3MWC/pdb
- Classification: LIGASE
- Organism(s): Kosmotoga olearia TBF 19.5.1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-05-05 Released: 2010-05-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.262 (Depositor), 0.260 (DCC)
- R-Value Work: 0.209 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.210 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mandelate racemase/muconate lactonizing protein | 400 | Kosmotoga olearia TBF 19.5.1 | Mutation(s): 0 Gene Names: Kole_0682 EC: 4.2.1.113 |  | |
UniProt | |||||
Find proteins for C5CFI0 (Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1)) Explore C5CFI0 Go to UniProtKB: C5CFI0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C5CFI0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.262 (Depositor), 0.260 (DCC)
- R-Value Work: 0.209 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.210 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 138.171 | α = 90 |
| b = 53.233 | β = 113.4 |
| c = 59.386 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| RESOLVE | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2010-05-19 Deposition Author(s): Patskovsky, Y., Toro, R., Dickey, M., Sauder, J.M., Gerlt, J., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-05-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
