Download MendeleyCrystal structure of methionine aminopeptidase 1b from Plasmodium Falciparum, PF10_0150
Wernimont, A.K., Artz, J.D., Crombet, L., Lew, J., Weadge, J., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Hui, R., Hills, T.To be published.
3S6B | pdb_00003s6b
Crystal structure of methionine aminopeptidase 1b from Plasmodium Falciparum, PF10_0150
- PDB DOI: https://doi.org/10.2210/pdb3S6B/pdb
- Classification: HYDROLASE
- Organism(s): Plasmodium falciparum 3D7
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-05-25 Released: 2011-06-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.227 (Depositor), 0.230 (DCC)
- R-Value Work: 0.178 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.180 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Methionine aminopeptidase | 368 | Plasmodium falciparum 3D7 | Mutation(s): 0 Gene Names: PF10_0150 EC: 3.4.11.18 |  | |
UniProt | |||||
Find proteins for Q8IJP2 (Plasmodium falciparum (isolate 3D7)) Explore Q8IJP2 Go to UniProtKB: Q8IJP2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8IJP2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| FE Query on FE | C [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.227 (Depositor), 0.230 (DCC)
- R-Value Work: 0.178 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.180 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.868 | α = 90 |
| b = 52.581 | β = 116.67 |
| c = 63.506 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| JDirector | data collection |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2011-06-29 Deposition Author(s): Wernimont, A.K., Artz, J.D., Crombet, L., Lew, J., Weadge, J., Tempel, W., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Hui, R., Hills, T., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2011-06-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
