Download MendeleyCrystal structure of the complex of Dihydrodipicolinate synthase from Acinetobacter baumannii with 5-Hydroxylysine at 2.6 A resolution
Shukla, P.K., Kaushik, S., Sinha, M., Kaur, P., Tewari, R., Sharma, S., Singh, T.P.To be published.
3TCE | pdb_00003tce
Crystal structure of the complex of Dihydrodipicolinate synthase from Acinetobacter baumannii with 5-Hydroxylysine at 2.6 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3TCE/pdb
- Classification: LYASE
- Organism(s): Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-08-09 Released: 2011-08-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.264 (Depositor), 0.300 (DCC)
- R-Value Work: 0.233 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.233 (Depositor)
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dihydrodipicolinate synthase | 291 | Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 | Mutation(s): 0 Gene Names: dhdps, HMPREF0010_03414 EC: 4.2.1.52 (PDB Primary Data), 4.3.3.7 (UniProt) |  | |
UniProt | |||||
Find proteins for D0CFC3 (Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP 70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)) Explore D0CFC3 Go to UniProtKB: D0CFC3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D0CFC3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LYZ Query on LYZ | C [auth A], D [auth B] | 5-HYDROXYLYSINE C6 H14 N2 O3 YSMODUONRAFBET-UHNVWZDZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.264 (Depositor), 0.300 (DCC)
- R-Value Work: 0.233 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.233 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.602 | α = 90 |
| b = 121.721 | β = 114.39 |
| c = 50.125 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| AMoRE | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2011-08-31 Deposition Author(s): Shukla, P.K., Kaushik, S., Sinha, M., Kaur, P., Tewari, R., Sharma, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2011-08-31
Type: Initial release - Version 1.1: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
