4KWE | pdb_00004kwe

GDP-bound, double-stranded, curved FtsZ protofilament structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 
    0.267 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.241 (Depositor), 0.230 (DCC) 
  • R-Value Observed: 
    0.242 (Depositor) 

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Ligand Structure Quality Assessment 

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This is version 1.2 of the entry. See complete history


Literature

FtsZ protofilaments use a hinge-opening mechanism for constrictive force generation

Li, Y.Hsin, J.Zhao, L.Cheng, Y.Shang, W.Huang, K.C.Wang, H.W.Ye, S.

(2013) Science 341: 392-395

  • DOI: https://doi.org/10.1126/science.1239248
  • Primary Citation of Related Structures:  
    4KWE

  • PubMed Abstract: 

    The essential bacterial protein FtsZ is a guanosine triphosphatase that self-assembles into a structure at the division site termed the "Z ring". During cytokinesis, the Z ring exerts a constrictive force on the membrane by using the chemical energy of guanosine triphosphate hydrolysis. However, the structural basis of this constriction remains unresolved. Here, we present the crystal structure of a guanosine diphosphate-bound Mycobacterium tuberculosis FtsZ protofilament, which exhibits a curved conformational state. The structure reveals a longitudinal interface that is important for function. The protofilament curvature highlights a hydrolysis-dependent conformational switch at the T3 loop that leads to longitudinal bending between subunits, which could generate sufficient force to drive cytokinesis.


  • Organizational Affiliation

    Life Sciences Institute, Zhejiang University, Hangzhou, 310058 Zhejiang, P.R. China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division protein FtsZ
A, B, C
382Mycobacterium tuberculosisMutation(s): 0 
Gene Names: ftsZMT2209MTCY270.18Rv2150c
UniProt
Find proteins for P9WN95 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WN95 
Go to UniProtKB:  P9WN95
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP9WN95
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free:  0.267 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.241 (Depositor), 0.230 (DCC) 
  • R-Value Observed: 0.242 (Depositor) 
Space Group: P 64 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 132.509α = 90
b = 132.509β = 90
c = 321.549γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
PHASESphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted GDPClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-07-31
    Type: Initial release
  • Version 1.1: 2013-09-04
    Changes: Database references
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references, Derived calculations, Refinement description