Download MendeleyCrystal Structure of Capsid Protein from Aura Virus in Complex with Piperazine
Aggarwal, M., Kumar, P., Tomar, S.To be published.
5G4B
Crystal structure of Aura virus capsid protein in complex with piperazine.
- PDB DOI: https://doi.org/10.2210/pdb5G4B/pdb
- Classification: HYDROLASE
- Organism(s): Aura virus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-05-08 Released: 2016-07-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.24 Å
- R-Value Free: 0.265
- R-Value Work: 0.199
- R-Value Observed: 0.201
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CAPSID PROTEIN | 158 | Aura virus | Mutation(s): 0 EC: 3.4.21.90 |  | |
UniProt | |||||
Find proteins for Q86925 (Aura virus) Explore Q86925 Go to UniProtKB: Q86925 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q86925 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PZE Query on PZE | B [auth A] | piperazine C4 H10 N2 GLUUGHFHXGJENI-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.24 Å
- R-Value Free: 0.265
- R-Value Work: 0.199
- R-Value Observed: 0.201
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.256 | α = 90 |
| b = 34.839 | β = 101.94 |
| c = 49.169 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2016-07-20 Deposition Author(s): Aggarwal, M., Kumar, P., Tomar, S.
Revision History (Full details and data files)
- Version 1.0: 2016-07-20
Type: Initial release - Version 1.1: 2017-03-29
Changes: Other - Version 1.2: 2017-07-05
Changes: Data collection - Version 1.3: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
