Download MendeleyCrystal Structure of O-acetylserine sulfhydrylase from Planctomyces Limnophila
Singh, R.P., Kumaran, S.To be published.
5XA2 | pdb_00005xa2
Crystal Structure of O-acetylserine sulfhydrylase from Planctomyces Limnophila
- PDB DOI: https://doi.org/10.2210/pdb5XA2/pdb
- Classification: TRANSFERASE
- Organism(s): Planctopirus limnophila DSM 3776
- Expression System: Enterobacteria phage L1
- Mutation(s): No
- Deposited: 2017-03-10 Released: 2017-04-12
- Funding Organization(s): CSIR
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.205 (Depositor), 0.200 (DCC)
- R-Value Work: 0.160 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.163 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cysteine synthase | 309 | Planctopirus limnophila DSM 3776 | Mutation(s): 0 Gene Names: Plim_3256 EC: 2.5.1.47 |  | |
UniProt | |||||
Find proteins for D5STP0 (Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / Mu 290)) Explore D5STP0 Go to UniProtKB: D5STP0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D5STP0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| LLP Query on LLP | A, B | L-PEPTIDE LINKING | C14 H22 N3 O7 P |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.205 (Depositor), 0.200 (DCC)
- R-Value Work: 0.160 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.163 (Depositor)
Space Group: P 2 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.996 | α = 90 |
| b = 90.041 | β = 90 |
| c = 128.36 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-04-12 Deposition Author(s): Singh, R.P., Kumaran, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| CSIR | India | -- |
Revision History (Full details and data files)
- Version 1.0: 2017-04-12
Type: Initial release - Version 1.1: 2018-07-18
Changes: Data collection, Refinement description - Version 1.2: 2021-07-14
Changes: Data collection - Version 1.3: 2023-11-22
Changes: Data collection, Database references, Refinement description
