Download MendeleyStructure of thioredoxin (trxA) from Rickettsia prowazekii str. Madrid E.
Abendroth, J., Buchko, G.W., Davies, D.R., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6NUP | pdb_00006nup
Structure of thioredoxin (trxA) from Rickettsia prowazekii str. Madrid E.
- PDB DOI: https://doi.org/10.2210/pdb6NUP/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Rickettsia prowazekii str. Madrid E
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2019-02-01 Released: 2019-02-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.206 (Depositor), 0.210 (DCC)
- R-Value Work: 0.163 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.167 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin | 134 | Rickettsia prowazekii str. Madrid E | Mutation(s): 0 Gene Names: trxA, RP002 |  | |
UniProt | |||||
Find proteins for Q9ZEE0 (Rickettsia prowazekii (strain Madrid E)) Explore Q9ZEE0 Go to UniProtKB: Q9ZEE0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9ZEE0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | B [auth A], C [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.206 (Depositor), 0.210 (DCC)
- R-Value Work: 0.163 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.167 (Depositor)
Diffraction Data: https://doi.org/10.18430/m36nup
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 32.74 | α = 90 |
| b = 45.16 | β = 90 |
| c = 60.93 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MoRDa | phasing |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2019-02-20 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2019-02-20
Type: Initial release - Version 1.1: 2024-04-03
Changes: Data collection, Database references, Refinement description - Version 1.2: 2024-10-16
Changes: Structure summary
