Download MendeleyStructure of pCW3 conjugation coupling protein TcpA
Traore, D.A.K., Whisstock, J.C.To be published.
6O1W | pdb_00006o1w
Structure of pCW3 conjugation coupling protein TcpA monomer orthorhombic crystal form
- PDB DOI: https://doi.org/10.2210/pdb6O1W/pdb
- Classification: TRANSLOCASE
- Organism(s): Clostridium perfringens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-02-22 Released: 2020-02-26
- Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.230 (Depositor), 0.227 (DCC)
- R-Value Work: 0.179 (Depositor), 0.172 (DCC)
- R-Value Observed: 0.182 (Depositor)
This is version 2.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA translocase coupling protein | 358 | Clostridium perfringens | Mutation(s): 0 Gene Names: tcpA, pCW3_0030 |  | |
UniProt | |||||
Find proteins for Q1PLI0 (Clostridium perfringens) Explore Q1PLI0 Go to UniProtKB: Q1PLI0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1PLI0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BGC Query on BGC | C [auth A], D [auth A], E [auth A], F [auth B], G [auth B] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.230 (Depositor), 0.227 (DCC)
- R-Value Work: 0.179 (Depositor), 0.172 (DCC)
- R-Value Observed: 0.182 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.17 | α = 90 |
| b = 101.83 | β = 90 |
| c = 140.04 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| Aimless | data scaling |
| SHELX | phasing |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-02-26 Deposition Author(s): Traore, D.A.K., Ahktar, N., Torres, V.T., Adams, V., Coulibaly, F., Panjikar, S., Caradoc-Davies, T.T., Rood, J.I., Whisstock, J.C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Health and Medical Research Council (NHMRC, Australia) | Australia | GNT1104502 |
Revision History (Full details and data files)
- Version 1.0: 2020-02-26
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2024-11-13
Changes: Data collection, Database references, Structure summary
