Download MendeleyCrystal structure of CcbD complex with carrier protein
Mori, T., Lyu, S., Abe, I.To be published.
7YN3
Crystal structure of CcbD complex with CcbZ carrier protein domain
- PDB DOI: https://doi.org/10.2210/pdb7YN3/pdb
- Classification: LYASE
- Organism(s): Streptomyces caelestis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-07-29 Released: 2023-08-02
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.226
- R-Value Work: 0.175
- R-Value Observed: 0.177
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CcbD | 370 | Streptomyces caelestis | Mutation(s): 0 Gene Names: HDA41_002772 |  | |
UniProt | |||||
Find proteins for E9JES9 (Streptomyces caelestis) Explore E9JES9 Go to UniProtKB: E9JES9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E9JES9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CcbZ | 78 | Streptomyces caelestis | Mutation(s): 0 Gene Names: HDA41_002769 |  | |
UniProt | |||||
Find proteins for E9JES6 (Streptomyces caelestis) Explore E9JES6 Go to UniProtKB: E9JES6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E9JES6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PNS (Subject of Investigation/LOI) Query on PNS | G [auth B], H [auth C] | 4'-PHOSPHOPANTETHEINE C11 H23 N2 O7 P S JDMUPRLRUUMCTL-VIFPVBQESA-N |  | ||
| 1N2 (Subject of Investigation/LOI) Query on 1N2 | E [auth A], F [auth B] | 1,1'-ethane-1,2-diyldipyrrolidine-2,5-dione C10 H12 N2 O4 ZFMTZVFTWHQGNQ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.226
- R-Value Work: 0.175
- R-Value Observed: 0.177
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.572 | α = 90 |
| b = 90.104 | β = 90 |
| c = 124.411 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-08-02
Type: Initial release
