Download MendeleyCrystal structure of AtHPPD-2HPA complex
Dong, J., Lin, H.-Y., Yang, G.-F.To be published.
8XIB
Crystal structure of AtHPPD-2HPA complex
- PDB DOI: https://doi.org/10.2210/pdb8XIB/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-12-19 Released: 2024-12-25
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.214
- R-Value Work: 0.183
- R-Value Observed: 0.184
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 4-hydroxyphenylpyruvate dioxygenase | 417 | Arabidopsis thaliana | Mutation(s): 0 Gene Names: HPD, PDS1, At1g06570, F12K11.9 EC: 1.13.11.27 |  | |
UniProt | |||||
Find proteins for P93836 (Arabidopsis thaliana) Explore P93836 Go to UniProtKB: P93836 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P93836 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| OHP Query on OHP | C [auth A] | (2-HYDROXYPHENYL)ACETIC ACID C8 H8 O3 CCVYRRGZDBSHFU-UHFFFAOYSA-N |  | ||
| CO Query on CO | B [auth A] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.214
- R-Value Work: 0.183
- R-Value Observed: 0.184
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.784 | α = 90 |
| b = 84.08 | β = 100.18 |
| c = 61.716 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-12-25 Deposition Author(s): Dong, J., Lin, H.-Y., Yang, G.-F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-12-25
Type: Initial release
