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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Javed, A."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (8)
	DNA molecule (5)
	Bacillus phage GA1 (1)
	Bovine papillomavirus (1)
	Clostridium phage phiCPV4 (1)
	Ipomoea batatas (1)
	Nicotiana tabacum (1)
	Satellite tobacco necrosis virus 1 (1)
	Sweet potato feathery mottle virus (1)
	Sweet potato mild mottle virus (1)

Taxonomy

	Eukaryota (10)
	unclassified sequences (5)
	Riboviria (3)
	Duplodnaviria (2)
	Monodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (11)
	X-RAY DIFFRACTION (8)

Polymer Entity Type

	Protein (14)
	DNA (6)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	> 4.5 (5)

Release Date

	2015 - 2019 (8)
	2020 - 2024 (10)
	2025 - 2029 (1)

Enzyme Classification Name

	Isomerases (8)
	Hydrolases (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (2)
	Icosahedral (1)

SCOP Classification

All beta proteins (8)

AllSelected

1 to 19 of 19 Structures

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5CBT \| pdb_00005cbt	Download File View File

Human Cyclophilin D Complexed with Inhibitor

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	4ZL, EDO, FMT, K, PG4, PGE

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5CBU \| pdb_00005cbu	Download File View File

Human Cyclophilin D Complexed with Inhibitor.

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	4ZM, EDO, K, PG4, PGE

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5CBV \| pdb_00005cbv	Download File View File

Human Cyclophilin D Complexed with Inhibitor

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Human Cyclophilin D (protein)
Unique Ligands	4ZP, FMT, K, PG4, PGE

Explore in 3D

5CBW \| pdb_00005cbw	Download File View File

Human Cyclophilin D Complexed with Inhibitor.

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	4ZO, FMT, K, PG4, PGE

Explore in 3D

5CCN \| pdb_00005ccn	Download File View File

Human Cyclophilin D Complexed with Inhibitor

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	4ZZ, FMT, K, PEG, PG4, PGE

Explore in 3D

5CCQ \| pdb_00005ccq	Download File View File

Human Cyclophilin D Complexed with Inhibitor

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	502, FMT, K, PG4, PGE

Explore in 3D

5CCR \| pdb_00005ccr	Download File View File

Human Cyclophilin D Complexed with Inhibitor

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	4ZT, FMT, K, PEG, PG4, PGE

Explore in 3D

5CCS \| pdb_00005ccs	Download File View File

Human Cyclophilin D Complexed with Inhibitor

Gibson, R.P., Shore, E., Kershaw, N., Awais, M., Javed, A., Latawiec, D., Pandalaneni, S., Wen, L., Berry, N., O'Neill, P., Sutton, R., Lian, L.Y.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	C4Y

Explore in 3D

7APD \| pdb_00007apd	Download File View File

Bovine Papillomavirus E1 DNA helicase-replication fork complex

Javed, A., Major, B., Stead, J., Sanders, C.M., Orlova, E.V.

(2021) Nat Commun 12: 5535-5535

Released	2021-11-17
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Bovine papillomavirus
Macromolecule	Replication protein E1 (protein) DNA (36-MER) (nucleic acid) DNA (40-MER) (nucleic acid)

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7PV2 \| pdb_00007pv2	Download File View File

GA1 bacteriophage portal protein

Javed, A., Villanueva, H., Orlova, E.V., Savva, R.

(2021) Viruses 13:

Released	2022-10-12
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Bacillus phage GA1
Macromolecule	Head-tail connector (Portal protein) (protein)

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7PV4 \| pdb_00007pv4	Download File View File

PhiCPV4 bacteriophage Portal Protein

Javed, A., Villanueva, H., Orlova, E.V., Savva, R.

(2021) Viruses 13:

Released	2022-10-12
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Clostridium phage phiCPV4
Macromolecule	Connector protein (protein)

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7YWH \| pdb_00007ywh	Download File View File

Six DNA Helix Bundle nanopore - State 1

Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.

(2023) Nat Commun 14: 3630-3630

Released	2023-05-24
Method	ELECTRON MICROSCOPY 8 Å
Organisms	DNA molecule
Macromolecule	Unique nucleic acid chains: 6

Explore in 3D

7YWI \| pdb_00007ywi	Download File View File

Six DNA duplex bundle nanopore - State 2

Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.

(2023) Nat Commun 14: 3630-3630

Released	2023-05-24
Method	ELECTRON MICROSCOPY 8 Å
Organisms	DNA molecule
Macromolecule	Unique nucleic acid chains: 6

Explore in 3D

7YWL \| pdb_00007ywl	Download File View File

Six DNA Helix Bundle nanopore - State 3

Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.

(2023) Nat Commun 14: 3630-3630

Released	2023-05-24
Method	ELECTRON MICROSCOPY 8 Å
Organisms	DNA molecule
Macromolecule	Unique nucleic acid chains: 6

Explore in 3D

7YWN \| pdb_00007ywn	Download File View File

Six DNA Helix Bundle nanopore - State 4

Javed, A., Ahmad, K., Lanphere, C., Orlova, E.V., Coveney, P., Howorka, S.

(2023) Nat Commun 14: 3630-3630

Released	2023-05-24
Method	ELECTRON MICROSCOPY 8 Å
Organisms	DNA molecule
Macromolecule	Unique nucleic acid chains: 6

Explore in 3D

7YWO \| pdb_00007ywo	Download File View File

Six DNA Helix Bundle nanopore - State 5

Javed, A., Ahmad, K., Lanphere, C., Coveney, P., Howorka, S., Orlova, E.V.

(2023) Nat Commun 14: 3630-3630

Released	2023-05-24
Method	ELECTRON MICROSCOPY 8 Å
Organisms	DNA molecule
Macromolecule	Unique nucleic acid chains: 6

Explore in 3D

8ACB \| pdb_00008acb	Download File View File

CryoEM structure of sweet potato feathery mottle virus VLP

Javed, A., Byrne, J.M., Ranson, N., Lomonosoff, G.

(2023) Commun Biol 6: 433-433

Released	2023-05-17
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Ipomoea batatas Sweet potato feathery mottle virus
Macromolecule	Genome polyprotein (protein) Single-stranded RNA (nucleic acid)

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8ACC \| pdb_00008acc	Download File View File

CryoEM structure of sweet potato mild mottle virus VLP

Javed, A., Byrne, B.M., Ranson, N., Lomonosoff, G.

(2023) Commun Biol 6: 433-433

Released	2023-05-17
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Nicotiana tabacum Sweet potato mild mottle virus
Macromolecule	Polyprotein (protein) Single-stranded RNA (nucleic acid)

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8QKM \| pdb_00008qkm	Download File View File

Symmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS1-5 gRNA

Javed, A., Mata, P.C., Stockley, P.

To be published

Released	2025-03-26
Method	ELECTRON MICROSCOPY 2.39 Å
Organisms	Satellite tobacco necrosis virus 1
Macromolecule	Capsid protein (protein)
Unique Ligands	CA

1 to 19 of 19 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5CBT | pdb_00005cbt

Human Cyclophilin D Complexed with Inhibitor

5CBU | pdb_00005cbu

Human Cyclophilin D Complexed with Inhibitor.

5CBV | pdb_00005cbv

Human Cyclophilin D Complexed with Inhibitor

5CBW | pdb_00005cbw

Human Cyclophilin D Complexed with Inhibitor.

5CCN | pdb_00005ccn

Human Cyclophilin D Complexed with Inhibitor

5CCQ | pdb_00005ccq

Human Cyclophilin D Complexed with Inhibitor

5CCR | pdb_00005ccr

Human Cyclophilin D Complexed with Inhibitor

5CCS | pdb_00005ccs

Human Cyclophilin D Complexed with Inhibitor

7APD | pdb_00007apd

Bovine Papillomavirus E1 DNA helicase-replication fork complex

7PV2 | pdb_00007pv2

GA1 bacteriophage portal protein

7PV4 | pdb_00007pv4

PhiCPV4 bacteriophage Portal Protein

7YWH | pdb_00007ywh

Six DNA Helix Bundle nanopore - State 1

7YWI | pdb_00007ywi

Six DNA duplex bundle nanopore - State 2

7YWL | pdb_00007ywl

Six DNA Helix Bundle nanopore - State 3

7YWN | pdb_00007ywn

Six DNA Helix Bundle nanopore - State 4

7YWO | pdb_00007ywo

Six DNA Helix Bundle nanopore - State 5

8ACB | pdb_00008acb

CryoEM structure of sweet potato feathery mottle virus VLP

8ACC | pdb_00008acc

CryoEM structure of sweet potato mild mottle virus VLP

8QKM | pdb_00008qkm

Symmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS1-5 gRNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5CBT | pdb_00005cbt

5CBU | pdb_00005cbu

5CBV | pdb_00005cbv

5CBW | pdb_00005cbw

5CCN | pdb_00005ccn

5CCQ | pdb_00005ccq

5CCR | pdb_00005ccr

5CCS | pdb_00005ccs

7APD | pdb_00007apd

7PV2 | pdb_00007pv2

7PV4 | pdb_00007pv4

7YWH | pdb_00007ywh

7YWI | pdb_00007ywi

7YWL | pdb_00007ywl

7YWN | pdb_00007ywn

7YWO | pdb_00007ywo

8ACB | pdb_00008acb

8ACC | pdb_00008acc

8QKM | pdb_00008qkm