9GB4 | pdb_00009gb4

Contracted phiCD508 portal

PDB DOI: https://doi.org/10.2210/pdb9GB4/pdb
EM Map EMD-51197: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Clostridioides difficile
Mutation(s): No

Deposited: 2024-07-29 Released: 2025-03-26
Deposition Author(s): Wilson, J.S., Fagan, R.P., Bullough, P.A.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Molecular mechanism of bacteriophage tail contraction- structure of an S-layer-penetrating bacteriophage

Wilson, J.S., Fortier, L.C., Fagan, R.P., Bullough, P.A.

To be published.

Macromolecule Content

Total Structure Weight: 686.88 kDa
Atom Count: 43,008
Modelled Residue Count: 5,340
Deposited Residue Count: 6,000
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
gp45 - Portal protein	A [auth L] B [auth A] C [auth B] D [auth C] E [auth D] A [auth L], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K]	500	Clostridioides difficile	Mutation(s): 0
UniProt
Find proteins for A0A069A478 (Clostridioides difficile) Explore A0A069A478 Go to UniProtKB: A0A069A478
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A069A478
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.88 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-03-26

Deposition Author(s):

Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB/P02002X/1

Revision History (Full details and data files)

Version 1.0: 2025-03-26
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.