2IJR | pdb_00002ijr

Crystal structure of a protein api92 from Yersinia pseudotuberculosis, Pfam DUF1281

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ijra1	Multi-domain proteins (alpha and beta)	Api92-like	Api92-like	Api92-like	Hypothetical protein api92	(Yersinia pseudotuberculosis ) [TaxId: 633 ],	SCOPe (2.08)
A	d2ijra2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pseudotuberculosis ) [TaxId: 633 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Api92-like	8022154	4002675	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Api92-like	8034534	3001588	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1281	e2ijrA1	A: alpha arrays	X: helical domain in Api92-like proteins (From Topology)	H: helical domain in Api92-like proteins (From Topology)	T: helical domain in Api92-like proteins	F: DUF1281	ECOD (1.6)
A	DUF1281_1	e2ijrA2	A: a+b two layers	X: Alpha-beta plaits	H: ferredoxin-like domain in Api92-like proteins (From Topology)	T: ferredoxin-like domain in Api92-like proteins	F: DUF1281_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1270	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Api92-like domains	CATH (4.3.0)
A	1.10.3530.10	Mainly Alpha	Orthogonal Bundle	Api92-like	Api92-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF06924	Protein of unknown function (DUF1281) (DUF1281)	Protein of unknown function (DUF1281)	-	Family
A	PF18406	Ferredoxin-like domain in Api92-like protein (DUF1281_C)	Ferredoxin-like domain in Api92-like protein	This domain has a ferredoxin like fold. It is often found to the C terminus of Pfam:PF06924.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR041329	YubB, ferredoxin-like domain	Domain
A	IPR009694	Protein of unknown function DUF1281	Family
A	IPR023136	Api92-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.