Download MendeleyCrystal structure of a hypothetical protein from Yersinia pseudotuberculosis
Jin, X., Min, T., Bonanno, J.B., Sauder, J.M., Wasserman, S., Smith, D., Burley, S.K., Shapiro, L.To be published.
2IJR | pdb_00002ijr
Crystal structure of a protein api92 from Yersinia pseudotuberculosis, Pfam DUF1281
- PDB DOI: https://doi.org/10.2210/pdb2IJR/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Yersinia pseudotuberculosis
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2006-09-30 Released: 2006-10-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.279 (Depositor), 0.280 (DCC)
- R-Value Work: 0.225 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.227 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein api92 | 300 | Yersinia pseudotuberculosis | Mutation(s): 8 Gene Names: api92 |  | |
UniProt | |||||
Find proteins for Q6EVP2 (Yersinia pseudotuberculosis) Explore Q6EVP2 Go to UniProtKB: Q6EVP2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6EVP2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.279 (Depositor), 0.280 (DCC)
- R-Value Work: 0.225 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.227 (Depositor)
Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 88.656 | α = 90 |
| b = 88.656 | β = 90 |
| c = 218.227 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXS | phasing |
Entry History
Deposition Data
- Released Date: 2006-10-31 Deposition Author(s): Jin, X., Min, T., Bonanno, J.B., Sauder, J.M., Wasserman, S., Smith, D., Burley, S.K., Shapiro, L., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-10-31
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-10-30
Changes: Data collection, Database references, Structure summary
