Download MendeleyCrystal structure of hypothetical protein from Silicibacter pomeroyi
Bonanno, J.B., Dickey, M., Bain, K.T., Slocombe, A., Ozyurt, S., Wasserman, S., Burley, S.K., Almo, S.C.To be published.
2IMH | pdb_00002imh
Crystal structure of protein SPO2555 from Silicibacter pomeroyi, Pfam DUF1028
- PDB DOI: https://doi.org/10.2210/pdb2IMH/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Ruegeria pomeroyi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2006-10-04 Released: 2006-10-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.207 (Depositor), 0.213 (DCC)
- R-Value Work: 0.171 (Depositor), 0.175 (DCC)
- R-Value Observed: 0.173 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein UNP Q5LQD5_SILPO | 231 | Ruegeria pomeroyi | Mutation(s): 5 Gene Names: SPO2555 |  | |
UniProt | |||||
Find proteins for Q5LQD5 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Explore Q5LQD5 Go to UniProtKB: Q5LQD5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5LQD5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.207 (Depositor), 0.213 (DCC)
- R-Value Work: 0.171 (Depositor), 0.175 (DCC)
- R-Value Observed: 0.173 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.25 | α = 90 |
| b = 69.594 | β = 90 |
| c = 105.792 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CBASS | data collection |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2006-10-17 Deposition Author(s): Bonanno, J.B., Dickey, M., Bain, K.T., Slocombe, A., Ozyurt, S., Wasserman, S., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-10-17
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2021-02-03
Changes: Advisory, Database references, Derived calculations, Structure summary - Version 1.4: 2024-10-16
Changes: Advisory, Data collection, Database references, Structure summary
