8QKM | pdb_00008qkm

Symmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS1-5 gRNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
AB [auth 0]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
BB [auth 1]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
CB [auth 2]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
DB [auth 3]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
EB [auth 4]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
FB [auth 5]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
GB [auth 6]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
HB [auth 7]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)
ZA [auth z]	SCOP2B Superfamily	Satellite viruses	8038652	3000942	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	PF03898	Satellite tobacco necrosis virus coat protein (TNV_CP)	Satellite tobacco necrosis virus coat protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein	structural molecule activity RNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR005597	Satellite tobacco necrosis virus coat protein-like	Family
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR010392	Satellite virus coat	Family
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR029053	Viral coat protein subunit	Homologous Superfamily

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Symmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS1-5 gRNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

8QKM | pdb_00008qkm