8ONG

Structure of the endothelial monocyte activating polypeptide II (EMAP II) in solution

PDB DOI: https://doi.org/10.2210/pdb8ONG/pdb

Classification: CYTOKINE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-04-02 Released: 2024-04-10
Deposition Author(s): Lozhko, D., Kolomiiets, L., Kornelyuk, A.I., Zhukov, I.
Funding Organization(s): Polish National Science Centre, European Communitys Seventh Framework Programme

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 19
Selection Criteria: structures with the lowest energy

Method: SOLUTION SCATTERING

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural analysis and conformational flexibility of endothelial monocyte activating polypeptide II (EMAP II) by means NMR spectroscopy and molecular dynamics simulations

Lozhko, D., Kolomiiets, L., Zhukova, L., Taube, M., Dadlez, M., Kozak, M., Kornelyuk, A.I., Zhukov, I.

To be published.

Macromolecule Content

Total Structure Weight: 18.56 kDa
Atom Count: 1,293
Modelled Residue Count: 169
Deposited Residue Count: 169
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1	A	169	Homo sapiens	Mutation(s): 0 Gene Names: AIMP1, EMAP2, SCYE1
UniProt & NIH Common Fund Data Resources
Find proteins for Q12904 (Homo sapiens) Explore Q12904 Go to UniProtKB: Q12904
PHAROS: Q12904 GTEx: ENSG00000164022
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q12904
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 19
Selection Criteria: structures with the lowest energy

Method: SOLUTION SCATTERING

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-04-10

Deposition Author(s):

Kornelyuk, A.I.

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	N 30107131/2150
European Communitys Seventh Framework Programme	European Union	BioNMR contract 261863

Revision History (Full details and data files)

Version 1.0: 2024-04-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.