9PSS | pdb_00009pss

IRAK4 in Complex with Compound 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 
    0.283 (Depositor), 0.282 (DCC) 
  • R-Value Work: 
    0.247 (Depositor), 0.247 (DCC) 
  • R-Value Observed: 
    0.248 (Depositor) 

Starting Model: experimental
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Literature

Examination of Noncanonical Kinase Hinge Binders Leads to Thiadiazoles as Potent IRAK4 Inhibitors.

Ammann, S.E.Brizgys, G.Ferrao, R.D.Wright, N.E.Mukherjee, P.K.Bacon, E.M.Chin, E.Chou, C.Cottell, J.J.Hammond, A.Ndukwe, M.S.Park, G.Y.Shatskikh, M.E.Suekawa-Pirrone, K.Warr, M.R.Yang, Z.Y.Zipfel, S.M.Taylor, J.G.

(2026) ACS Med Chem Lett 17: 175-182

  • DOI: https://doi.org/10.1021/acsmedchemlett.5c00602
  • Primary Citation of Related Structures:  
    9PSS, 9PST, 9PSU

  • PubMed Abstract: 

    A hallmark of most known small-molecule orthosteric kinase inhibitors is hydrogen-bonding to the hinge-region of the kinase to mimic the hinge interaction of adenine. Herein we report our studies on deviation from canonical hinge-binders in the context of IRAK4 inhibitors. Small-molecule inhibitors of IRAK4 have generated interest as potential treatments for inflammatory diseases. Notably, in our discovery efforts we identified pyridinyl-thiadiazoles as noncanonical hinge-binders. X-ray structural evidence supports that the thiadiazole moiety engages in a rare intermolecular noncovalent sulfur-oxygen interaction. This thiadiazole series, exemplified by compounds 19 and 22 , has shown promise for potent, selective, orally bioavailable IRAK4 inhibitors.


  • Organizational Affiliation
    • Gilead Sciences Inc., 333 Lakeside Drive, Foster City, California 94404, United States.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-1 receptor-associated kinase 4
A, B
304Homo sapiensMutation(s): 0 
Gene Names: IRAK4
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NWZ3 (Homo sapiens)
Explore Q9NWZ3 
Go to UniProtKB:  Q9NWZ3
PHAROS:  Q9NWZ3
GTEx:  ENSG00000198001 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NWZ3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free:  0.283 (Depositor), 0.282 (DCC) 
  • R-Value Work:  0.247 (Depositor), 0.247 (DCC) 
  • R-Value Observed: 0.248 (Depositor) 
Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.63α = 90
b = 109.42β = 90
c = 141.08γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data

  • Released Date: 2026-01-28 
  • Deposition Author(s): Ferrao, R.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-28
    Type: Initial release